Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01300 ATGATTATAACACACAGAACCATGTGGATCATTACTCTCCCGAGCTGGATTGGGTATTGGACTGAAGAGCATCCGCTTTTCGATCACTCCCTTCAACGCGAATATTTCACTTCCTTCTTTTCTCTTCTTCCACCCGGTGTCCCTGCACTTTCTTGCTCCATATTGTGGCAGCTTGAAGCCCTGTTCATAACTAGGGCTTGCGACTCACCTGCTCCCAACTTTGCTGCCACTTCCCCGGGTCTAGAAGAAAAGTTAAAGAGTTCTGCAATGGGAAAACATTCGAAGACCAGTTGCAAGTCGGCTTCCCACAAGCTATTTAAGGATAAGGCAAAGAACCGGGTCGATGATCTGCAAAACATATTTGTAGATTTGCAGTATGCAAGGAAGGAGAGCCGCACGGTTGATGTGTCAGTTCTCGAGGAACAAGTCCATCAGATGCTTCGTGAGTGGAAATCTGAGCTGAACGAGCCCTCTCCAGCATCCTCTTTGCAACAAGGTGGAAGTTTTGGGTCATTTTCATCGGACATTTGTCGATTGTTACAACTTTGTGAGGAGGATGATGATGCGTCTAGTCCATTAGCTGCTCCTAAGCCTGAACCTAATGAGCAAAATTTGCAGGTTGGAGATGCTATGGCACATCAAGAGATGAACATTGGGATACAAGCATGGAGTTATTGA 678 46.02 MIITHRTMWIITLPSWIGYWTEEHPLFDHSLQREYFTSFFSLLPPGVPALSCSILWQLEALFITRACDSPAPNFAATSPGLEEKLKSSAMGKHSKTSCKSASHKLFKDKAKNRVDDLQNIFVDLQYARKESRTVDVSVLEEQVHQMLREWKSELNEPSPASSLQQGGSFGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQVGDAMAHQEMNIGIQAWSY 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8428355 8430954 + CmaCh03G013000.1 Cma03g01300 290871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01300 225 PANTHER TRANSCRIPTION FACTOR VOZ1 90 212 IPR039277 GO:0006355|GO:0048578
Cma03g01300 225 PANTHER BNAC03G58740D PROTEIN 90 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01300 - - - csv:101219536 233.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01300 Cma-Chr3:8428355 Cma07g00212 Cma-Chr7:978085 1.09E-81 dispersed
Cma20g00581 Cma-Chr20:2770379 Cma03g01300 Cma-Chr3:8428355 5.48E-41 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma07g00212 CST 269 745 VOZ-9 Transcription Factor Family AT1G28520 70.6 2.5e-197 685.6
Cma03g01301 . 26 382 VOZ-9 Transcription Factor Family AT1G28520 67.3 6.5e-137 485.0
Cma20g00581 CST 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.4 7.2e-136 481.5
Cma02g00196 CST 6 422 VOZ-9 Transcription Factor Family AT1G28520 56.4 9.1e-131 464.5
Cma03g01300 . 91 214 VOZ-9 Transcription Factor Family AT1G28520 78.2 4.6e-50 196.4
Cma02g00196 CST 11 415 VOZ-9 Transcription Factor Family AT2G42400 50.1 1.2e-105 380.9
Cma07g00212 CST 291 686 VOZ-9 Transcription Factor Family AT2G42400 50.2 2.3e-104 376.7
Cma03g01301 . 105 322 VOZ-9 Transcription Factor Family AT2G42400 70.2 5.5e-90 328.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0044631 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01300 Cma_Chr03 FPKM 23.324484 28.478796 24.439198 24.517426 19.712975 19.327875 18.668814 24.750635 23.142557 19.189034