Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01301 ATGTGTTTAAACTCTAAAAGTTGCATGAATATAAATTTTGTTGGGGAAGTTCTTAGTATCACTATTAACCTACTTCAGGGATTTAATGTGAATCGTATACACCAAGAACCAAGCTTCCCTCTAGTTGATCAATGCAAGAACTCCCCATCAGGAGTTCATGGTATGGTTATGAATAACTTGGAAGGAGCTACACATTCGGAGTGTCATCCGTTTGATTTACAGCAAGGCATTGAGCACAACTTTTACACTATCCTTAATGCTAGAGGTTTGGGTGGAGAGGGTGCAATTCCTCATGTTTCTGGCTACTGTCCCAGCATTTGCCCTCCACCTGCTGCTTTTTTAGGCCCAAAATGTGCGCTTTGGGATTGCCCACGACCTGCCCAAGGGATGGATTGGTGTGGGGACTACTGTAGCAGTTTTCATACTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCGGTGTTACGACCTGGTGGCATTGGTCTGAAGGATGGGTTGCTTTTTGCTGCTCTTAGGGCAAAGGCACAAGGGAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACGGCAAAATCCCCATGGAATGCTCCTGAGCTTTTTGATCTGTCAATACTGGAGGGTGAGATGATTAGGGAGTGGCTATTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGAAAGCAGAGGTCATTGCCTGATTACAGTGGACGTGGTTGGCATGAATCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAGAGATCTTATTATATGGATCCTCAGCCACTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAATAAGTACGACACCTGTGCTTTGTATCGATTGGAGCTGAAACATGTCGATGGGAAAAAAGGTTCCAAGGCGAAGGTAACCAACGATTCAGTTACTGATTTACAGAGGCAAATGGGGAGACTGACTGCTGAATTTCCTGATAATAAACGCCTTGTGAAGGGGAGGACCAGAATTAACACAAAAGTTGGTATTGGAAATGTTTACCCCTCAGCAAATAGAGTCATGCCACCCAATGGAACATATGACTATATGCTTCATGCACAATATGATTACCTGGTGGAGAATTTGAGCGAATATTACCTTACATAG 1152 43.84 MCLNSKSCMNINFVGEVLSITINLLQGFNVNRIHQEPSFPLVDQCKNSPSGVHGMVMNNLEGATHSECHPFDLQQGIEHNFYTILNARGLGGEGAIPHVSGYCPSICPPPAAFLGPKCALWDCPRPAQGMDWCGDYCSSFHTALALNEGPPGMGPVLRPGGIGLKDGLLFAALRAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDTCALYRLELKHVDGKKGSKAKVTNDSVTDLQRQMGRLTAEFPDNKRLVKGRTRINTKVGIGNVYPSANRVMPPNGTYDYMLHAQYDYLVENLSEYYLT 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8431013 8432985 + CmaCh03G013010.1 Cma03g01301 290872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01301 383 PANTHER TRANSCRIPTION FACTOR VOZ1 23 383 IPR039277 GO:0006355|GO:0048578
Cma03g01301 383 PANTHER TRANSCRIPTION FACTOR VOZ1 23 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01301 Cma-Chr3:8431013 Cma20g00581 Cma-Chr20:2770379 7.44E-130 dispersed
Cma03g01301 Cma-Chr3:8431013 Cma07g00212 Cma-Chr7:978085 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34706 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01301 - - csv:101219536 712.99