Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01301 ATGTGTTTAAACTCTAAAAGTTGCATGAATATAAATTTTGTTGGGGAAGTTCTTAGTATCACTATTAACCTACTTCAGGGATTTAATGTGAATCGTATACACCAAGAACCAAGCTTCCCTCTAGTTGATCAATGCAAGAACTCCCCATCAGGAGTTCATGGTATGGTTATGAATAACTTGGAAGGAGCTACACATTCGGAGTGTCATCCGTTTGATTTACAGCAAGGCATTGAGCACAACTTTTACACTATCCTTAATGCTAGAGGTTTGGGTGGAGAGGGTGCAATTCCTCATGTTTCTGGCTACTGTCCCAGCATTTGCCCTCCACCTGCTGCTTTTTTAGGCCCAAAATGTGCGCTTTGGGATTGCCCACGACCTGCCCAAGGGATGGATTGGTGTGGGGACTACTGTAGCAGTTTTCATACTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCGGTGTTACGACCTGGTGGCATTGGTCTGAAGGATGGGTTGCTTTTTGCTGCTCTTAGGGCAAAGGCACAAGGGAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACGGCAAAATCCCCATGGAATGCTCCTGAGCTTTTTGATCTGTCAATACTGGAGGGTGAGATGATTAGGGAGTGGCTATTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGAAAGCAGAGGTCATTGCCTGATTACAGTGGACGTGGTTGGCATGAATCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAGAGATCTTATTATATGGATCCTCAGCCACTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAATAAGTACGACACCTGTGCTTTGTATCGATTGGAGCTGAAACATGTCGATGGGAAAAAAGGTTCCAAGGCGAAGGTAACCAACGATTCAGTTACTGATTTACAGAGGCAAATGGGGAGACTGACTGCTGAATTTCCTGATAATAAACGCCTTGTGAAGGGGAGGACCAGAATTAACACAAAAGTTGGTATTGGAAATGTTTACCCCTCAGCAAATAGAGTCATGCCACCCAATGGAACATATGACTATATGCTTCATGCACAATATGATTACCTGGTGGAGAATTTGAGCGAATATTACCTTACATAG 1152 43.84 MCLNSKSCMNINFVGEVLSITINLLQGFNVNRIHQEPSFPLVDQCKNSPSGVHGMVMNNLEGATHSECHPFDLQQGIEHNFYTILNARGLGGEGAIPHVSGYCPSICPPPAAFLGPKCALWDCPRPAQGMDWCGDYCSSFHTALALNEGPPGMGPVLRPGGIGLKDGLLFAALRAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDTCALYRLELKHVDGKKGSKAKVTNDSVTDLQRQMGRLTAEFPDNKRLVKGRTRINTKVGIGNVYPSANRVMPPNGTYDYMLHAQYDYLVENLSEYYLT 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8431013 8432985 + CmaCh03G013010.1 Cma03g01301 290872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01301 383 PANTHER TRANSCRIPTION FACTOR VOZ1 23 383 IPR039277 GO:0006355|GO:0048578
Cma03g01301 383 PANTHER TRANSCRIPTION FACTOR VOZ1 23 383 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01301 - - - csv:101219536 712.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01301 Cma-Chr3:8431013 Cma20g00581 Cma-Chr20:2770379 7.44E-130 dispersed
Cma03g01301 Cma-Chr3:8431013 Cma07g00212 Cma-Chr7:978085 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g159 . . Bda02g00505 Bda09g01233 . Bpe01g00454 . . . . Cma03g01301 . Car03g01162 Car07g00179 Sed14g1495 . Cpe10g00166 Bhi03g00349 Tan03g2527 Cmetu04g0422 . . . . Cla01g02285 Cam01g2397 Cec04g2043 Cco04g2121 Clacu01g2418 Cmu01g2282 Cre04g1950 Cone1ag0187 Cone5ag1682 . . Lsi01g00276 Csa06g03664 . Cme08g00260 Blo08g00225 Blo14g00415 . . . Bpe08g00403 Bma07g00407 Bma11g00428 . Cmo03g01297 Cmo07g00212 . . . . Cpe19g01043 . . . . . . . . . . . . . . . . . Chy02g00265 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma07g00212 CST 269 745 VOZ-9 Transcription Factor Family AT1G28520 70.6 2.5e-197 685.6
Cma03g01301 . 26 382 VOZ-9 Transcription Factor Family AT1G28520 67.3 6.5e-137 485.0
Cma20g00581 CST 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.4 7.2e-136 481.5
Cma02g00196 CST 6 422 VOZ-9 Transcription Factor Family AT1G28520 56.4 9.1e-131 464.5
Cma03g01300 . 91 214 VOZ-9 Transcription Factor Family AT1G28520 78.2 4.6e-50 196.4
Cma02g00196 CST 11 415 VOZ-9 Transcription Factor Family AT2G42400 50.1 1.2e-105 380.9
Cma07g00212 CST 291 686 VOZ-9 Transcription Factor Family AT2G42400 50.2 2.3e-104 376.7
Cma03g01301 . 105 322 VOZ-9 Transcription Factor Family AT2G42400 70.2 5.5e-90 328.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004233 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34706 None None None None Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01301 Cma_Chr03 FPKM 19.446604 19.253889 24.095398 22.677092 15.731911 16.913406 17.104715 23.052998 24.023262 24.424419