Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01305 ATGGCTTCATCAAACAGTCACTGGCCAAGCATGTTCAAGTCCAAACCCTGCAATTCCCATCACCAATGGCAACATGACATCAACTGCCTCAGATCTGCCCCTTACAACACAGTTGTTGGTGGGTATGAAGAGAAAAGTCCAGACCCAAAACCAAGATGGAATCCAAAGCCTGAACAAATTAGGATTCTTGAAGCGATTTTCAATTCAGGGATGGTGAATCCTCCAAGAGATGANATTAGAAAAATTCGAGGTCAGTTACAAGAATATGGCCAAGTGGGTGATGCCAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAAAACAAACTCCGCCATCTCCAAAACTCCAAATCCAATCATAATTCCCCAACCACCACCACCACCACCACCGCTCCTACAACAACAACAACAAAAACAACTACTCTTTCTCCCACCGCCGCCAACCCCGCCGCCACTTGTTCTTCCTCTTCTTCCTCCGACAAATCCTCCCCCAAAATATCACCCATGAAAAGTTTTACCTCCAATTCGGTGTCTCAGAACTACCTTCAACAACCCACCAACGAGCTCTTGCCTGAATCCTTCTTCTTCCCAATGCCACAAACCGGCGACGGCGGCGGTGTAATCTCTAATTTGGGTCAAGGGTTTTGCTTTTCTGAGCTTTGTAGTGTAGTGCAGCACGTTCCTGACCATGGGTTCGAGTCTTGCACAAACCTGTTGCTGAGTGAGTCTGAGCCATTTAAGAAAGATTTGATGAAGTCACAGCCACAGCCACAGTTCATGAATTATCATCCTTATTTGAATATCTCTACGGATCAAAGCCTTCCCCAAACAACTATTTCCACCGCAATTCCTCAAGGTGTAGGTGAAGTTTGTGGAGTAGGGGGGAAATCAACGGTGTTCATCAATGGTGTAGCGTTCGAGGTTGGTTGTGGGCCGTTTAATGTTCGTGAGGCTTTTGGTGATGATGCCGTTCTGATTCACTCCACCGGTCAGCCTGTTCTGACCAATGACTGGGGCCTCACTCTCCACTCACTCCAACATGGCGCTTACTATTATCTGATATAA 1071 45.85 MASSNSHWPSMFKSKPCNSHHQWQHDINCLRSAPYNTVVGGYEEKSPDPKPRWNPKPEQIRILEAIFNSGMVNPPRDXIRKIRGQLQEYGQVGDANVFYWFQNRKSRSKNKLRHLQNSKSNHNSPTTTTTTTAPTTTTTKTTTLSPTAANPAATCSSSSSSDKSSPKISPMKSFTSNSVSQNYLQQPTNELLPESFFFPMPQTGDGGGVISNLGQGFCFSELCSVVQHVPDHGFESCTNLLLSESEPFKKDLMKSQPQPQFMNYHPYLNISTDQSLPQTTISTAIPQGVGEVCGVGGKSTVFINGVAFEVGCGPFNVREAFGDDAVLIHSTGQPVLTNDWGLTLHSLQHGAYYYLI 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8445997 8447696 - CmaCh03G013050.1 Cma03g01305 290876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01305 356 SUPERFAMILY Homeodomain-like 45 114 IPR009057 -
Cma03g01305 356 MobiDBLite consensus disorder prediction 109 182 - -
Cma03g01305 356 CDD homeodomain 49 111 IPR001356 GO:0003677
Cma03g01305 356 Gene3D - 50 116 - -
Cma03g01305 356 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 356 IPR044557 GO:0003700|GO:0050793
Cma03g01305 356 ProSiteProfiles 'Homeobox' domain profile. 46 111 IPR001356 GO:0003677
Cma03g01305 356 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 356 - -
Cma03g01305 356 MobiDBLite consensus disorder prediction 117 182 - -
Cma03g01305 356 SMART HOX_1 48 115 IPR001356 GO:0003677
Cma03g01305 356 Pfam Homeodomain 50 110 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01305 Cma07g00209 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01305 Cma-Chr3:8445997 Cma14g00454 Cma-Chr14:2171571 1.45E-14 dispersed
Cma03g01305 Cma-Chr3:8445997 Cma07g00209 Cma-Chr7:966712 4.66E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34707 PF00046 Homeodomain 1.40E-13 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01305 - - bhj:120074379 514.998