Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01320 ATGGCTCAGGTTCATGGTAGCGCCACGGGTGGAATTAAGCTTTTTGGCACTATCATTCCTTTGCAGACCAGAAAAGTCAAGGATCAACCGGAGAAAGGCGGCGGCGGCGGAGGCGGTGCTGACGGTGATCAAACAGAGATGAAGAGGCCTGAAAAGATTATTCCATGTCCGAGATGTAAGAGCATGGACACCAAATTCTGTTACTTTAACAATTACAATGTTAATCAGCCCAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACTGCTGGTGGGGCGCTCCGGAATGTCCCCATCGGAGCTGGACGACGGAGAGCCAAGCCGCCGCCTAATTGCCGGACGCTTTCCGGCGAGATGCCCGATGATTATGGGCAACTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGACGCGGTGGAGGGGTGGCATCTGGCTGTGGCGGAACAGGATTTTACCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAATACGGTCAAACGTCTTAA 522 50.96 MAQVHGSATGGIKLFGTIIPLQTRKVKDQPEKGGGGGGGADGDQTEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGEMPDDYGQLYDAASGIIHQLELDAVEGWHLAVAEQDFTQVFPLKRQKIIGQYGQTS 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8520805 8521326 - CmaCh03G013200.1 Cma03g01320 290891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01320 173 MobiDBLite consensus disorder prediction 23 47 - -
Cma03g01320 173 Pfam Dof domain, zinc finger 52 107 IPR003851 GO:0003677|GO:0006355
Cma03g01320 173 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Cma03g01320 173 PANTHER CYCLIC DOF FACTOR 2 7 166 IPR045174 GO:0003700|GO:0006355
Cma03g01320 173 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Cma03g01320 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 7 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01320 - - - csv:101215015 317.775
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g01320 Cma13g00606 CCT
Cma03g01320 Cma18g00411 CCT
Cma03g01320 Cma07g00189 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01320 Cma-Chr3:8520805 Cma14g00533 Cma-Chr14:2644659 5.89E-36 dispersed
Cma13g00606 Cma-Chr13:5932833 Cma03g01320 Cma-Chr3:8520805 2.11E-51 wgd
Cma18g00411 Cma-Chr18:2242124 Cma03g01320 Cma-Chr3:8520805 1.94E-49 wgd
Cma03g01320 Cma-Chr3:8520805 Cma07g00189 Cma-Chr7:896540 9.15E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g214 . . Bda02g00030 Bda09g00803 . Bpe01g00871 Bma14g01000 Bma01g01447 Cmo13g00632 Cmo18g00391 Cma03g01320 Cma07g00189 Car03g01185 Car07g00157 Sed10g0236 Cpe09g00808 Cpe10g00145 Bhi03g00282 Tan03g2576 Cmetu04g2899 . Hepe04g1916 . . Cla01g02318 Cam01g2430 Cec04g2078 Cco04g2154 Clacu01g2452 Cmu01g2315 Cre04g1984 . . Cone6ag0960 Cone9ag0968 Lsi01g00243 Csa06g03703 Chy12g00096 Cme08g00224 Blo08g00653 . . Bda07g00980 . Bpe08g00766 Bma07g00840 Bma11g00999 Sed01g2154 Cmo03g01322 Cmo07g00184 Cma13g00606 Cma18g00411 Car13g00488 Car18g00388 Cpe19g01067 Cpe20g00461 Bhi08g02203 Tan05g2493 Cmetu12g2109 Lac10g0947 Hepe07g1867 . . Cla03g00724 Cam03g0662 Cec03g0636 Cco03g0672 Clacu03g0770 Cmu03g1367 Cre03g0949 Lsi02g00805 Csa01g02327 Chy02g00228 Cme12g01293
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.6e-40 163.3
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 51.7 3.5e-40 162.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT1G29160 53.0 4.6e-40 161.8
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 53.8 6.0e-40 161.4
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.0e-41 165.2
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT2G34140 56.4 4.0e-41 165.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT2G34140 51.8 1.2e-37 153.7
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 50.9 4.6e-37 151.8
Cma04g02639 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 8.6e-40 161.8
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 61.7 8.1e-38 155.2
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 64.8 1.4e-37 154.5
Cma14g00157 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 62.4 1.2e-36 151.4
Cma04g01188 CST 1 134 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.5e-36 151.0
Cma13g00133 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cma11g00141 CCT,CST,ECH 132 478 C2C2-Dof Transcription Factor Family AT3G47500 51.6 5.0e-83 305.8
Cma14g00157 CCT,CST,ECH 59 132 C2C2-Dof Transcription Factor Family AT5G02460 93.2 8.8e-39 158.7
Cma01g00595 CCT,CST,ECH 1 130 C2C2-Dof Transcription Factor Family AT5G02460 55.0 2.0e-38 157.5
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 60.4 2.0e-38 157.5
Cma13g00133 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT5G02460 61.9 2.4e-36 150.6
Cma14g00157 CCT,CST,ECH 53 139 C2C2-Dof Transcription Factor Family AT3G55370 79.3 2.6e-37 153.7
Cma13g00133 CCT,CST,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 50.6 5.8e-37 152.5
Cma03g00431 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.8e-37 152.5
Cma11g00228 CCT,CST 30 311 C2C2-Dof Transcription Factor Family AT5G60850 51.9 4.0e-47 186.0
Cma10g00281 CCT,CST 26 318 C2C2-Dof Transcription Factor Family AT5G60850 52.8 8.8e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005702 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34709 PF02701 zf-Dof 1.20E-31 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01320 Cma_Chr03 FPKM 11.431034 14.9998 6.993041 6.951312 3.375535 3.774927 2.662906 0.54719 0.230516 0.0