Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01320 ATGGCTCAGGTTCATGGTAGCGCCACGGGTGGAATTAAGCTTTTTGGCACTATCATTCCTTTGCAGACCAGAAAAGTCAAGGATCAACCGGAGAAAGGCGGCGGCGGCGGAGGCGGTGCTGACGGTGATCAAACAGAGATGAAGAGGCCTGAAAAGATTATTCCATGTCCGAGATGTAAGAGCATGGACACCAAATTCTGTTACTTTAACAATTACAATGTTAATCAGCCCAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACTGCTGGTGGGGCGCTCCGGAATGTCCCCATCGGAGCTGGACGACGGAGAGCCAAGCCGCCGCCTAATTGCCGGACGCTTTCCGGCGAGATGCCCGATGATTATGGGCAACTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGACGCGGTGGAGGGGTGGCATCTGGCTGTGGCGGAACAGGATTTTACCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAATACGGTCAAACGTCTTAA 522 50.96 MAQVHGSATGGIKLFGTIIPLQTRKVKDQPEKGGGGGGGADGDQTEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGEMPDDYGQLYDAASGIIHQLELDAVEGWHLAVAEQDFTQVFPLKRQKIIGQYGQTS 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8520805 8521326 - CmaCh03G013200.1 Cma03g01320 290891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01320 173 MobiDBLite consensus disorder prediction 23 47 - -
Cma03g01320 173 Pfam Dof domain, zinc finger 52 107 IPR003851 GO:0003677|GO:0006355
Cma03g01320 173 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Cma03g01320 173 PANTHER CYCLIC DOF FACTOR 2 7 166 IPR045174 GO:0003700|GO:0006355
Cma03g01320 173 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Cma03g01320 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 7 166 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01320 Cma13g00606 CCT
Cma03g01320 Cma18g00411 CCT
Cma03g01320 Cma07g00189 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01320 Cma-Chr3:8520805 Cma14g00533 Cma-Chr14:2644659 5.89E-36 dispersed
Cma13g00606 Cma-Chr13:5932833 Cma03g01320 Cma-Chr3:8520805 2.11E-51 wgd
Cma18g00411 Cma-Chr18:2242124 Cma03g01320 Cma-Chr3:8520805 1.94E-49 wgd
Cma03g01320 Cma-Chr3:8520805 Cma07g00189 Cma-Chr7:896540 9.15E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34709 PF02701 zf-Dof 1.20E-31 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01320 - - csv:101215015 317.775