Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01326 ATGGCCGATCGGCCGGACTCTGACAAGAAGTCCGAAAGCACCAGGAAGGACATGCCGGCTCTTCTTTTGGGGCGGTACGAGATCGGGAAGCTCCTTGGCCATGGCACCTTTGCAAAGGTCTATCATGCCCGAAACATCAAATCCGACGAAGGTGTCGCCATTAAAGTCATCGATAAGGAGAAGATTCTCAAGGGCGGACTAATCGCCCACATCAAGCGCGAGATCTCAATCCTCCGCCGGGTTCGACATCCCAACATTGTGCAACTTTTCGAGGTTATGGCCACCAAGACCAAGATCTACTTCGTTATGGAATACGTCCGTGGCGGCGAGCTCTTCAAGAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTCGCCCGAAAGTATTTTCAGCAATTAATTTCCGCCGTTTCCTTTTGCCACGCGCGTGGTGTTTACCATCGCGACCTTAAGCCGGAGAATTTATTGCTCGATGAAAATGGGGATCTCAAGGTCTCCGATTTTGGCCTAAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTTCATACTTTCTGTGGTACACCGGCGTATGTTGCTCCGGAGGTATTGGCCCGCAAAGGGTATGAGGCCGCTAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCAGGCTATTTGCCCTTCCACGACCAAAACATCATGGCAATGTATAAGAAGATATACAAGGGGGAGTTCCGGTGTCCGAGATGGTTCTCGCCGGAGCTAGTTCGACTCCTGTCTCGTCTTTTGGATACAAATCTGGAAACCCGTTTCACAATTCCAGAAATCATGGAGAATCGATGGTTCAAAAAGAGGTATAAGCATATAAAATTCTACATCGAAGATGATAAGGTGTGCAACGTGGAGGACGACACCCAAGATGTGGATTCCTTGTCGGATCAATCTCAATCGGAATCGGATTCCGAATTCATTGAGACGAGAAGAAAGATGGGTTCACTCCCAAGACCGGCGAGTTTGAATGCATTCGATATAATATCATTTTCCCCGGGATTTGATCTTTCCGGGCTGTTCGAGGATGGAGGGGAGGAGGCAAGATTCGTGTCCAGTGCTCCAGTGTCGAAGATTATATCGAAGCTGGAAGATATCGCAAAATTGGTGAGTTTTAGCGTGAGGAAGAAGGACTGCAGGGTTAGCTTAGAGGGCACACGGGAAGGCGTCAAAGGGCCATTGACGATCGCGGCGGAGGTGTTCGAGTTGACGACGAAACTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGCGATAAAACAGAGTACGAAGAGTTCTGTAATAAGGAATTGAAACCGGCATTGTTGAATCTGAAGGAGGAGCCGGGAGCAGGTGCTCCATCACACATACCTTCAGATTCTGAATGA 1407 49.25 MADRPDSDKKSESTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKSDEGVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVSFCHARGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELVRLLSRLLDTNLETRFTIPEIMENRWFKKRYKHIKFYIEDDKVCNVEDDTQDVDSLSDQSQSESDSEFIETRRKMGSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEDIAKLVSFSVRKKDCRVSLEGTREGVKGPLTIAAEVFELTTKLVMVEVKRKGGDKTEYEEFCNKELKPALLNLKEEPGAGAPSHIPSDSE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8539246 8540652 - CmaCh03G013260.1 Cma03g01326 290897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01326 468 CDD STKc_SnRK3 25 279 - -
Cma03g01326 468 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 451 - -
Cma03g01326 468 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01326 468 Pfam NAF domain 334 390 IPR004041 GO:0007165
Cma03g01326 468 Gene3D Transferase(Phosphotransferase) domain 1 17 332 - -
Cma03g01326 468 SUPERFAMILY Protein kinase-like (PK-like) 22 316 IPR011009 -
Cma03g01326 468 MobiDBLite consensus disorder prediction 304 324 - -
Cma03g01326 468 CDD CIPK_C 338 448 - -
Cma03g01326 468 SMART serkin_6 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01326 468 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Cma03g01326 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cma03g01326 468 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01326 468 Gene3D Kinase associated domain 1, KA1 333 451 - -
Cma03g01326 468 PANTHER - 18 451 - -
Cma03g01326 468 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01326 Cma07g00182 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01326 Cma-Chr3:8539246 Cma07g01230 Cma-Chr7:6791652 4.51E-177 dispersed
Cma13g00599 Cma-Chr13:5887321 Cma03g01326 Cma-Chr3:8539246 3.55E-180 wgd
Cma18g00420 Cma-Chr18:2300342 Cma03g01326 Cma-Chr3:8539246 3.59E-180 wgd
Cma03g01326 Cma-Chr3:8539246 Cma07g00182 Cma-Chr7:871594 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68443 PF00069 Pkinase 1.00E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01326 - - csv:101214053 844.728