Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01328 ATGGAAGTTGTAAAAGTGGTCCTATTGCTGTTCATCCTCATCTGGGTCGTCTCTGCCTCTGACAGTCATTTGTCTCCGAAAGGAGTAAACTATGAAGTGGCGGCGTTGATGTCAGTGAAGAATTGGATACGGGACGAGCGGAGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGTTGAGGGCTTTGTTATTTCTCTTGAGATGTCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTTACCTTCGGACAATGTTCTTGCAAAATAATGAATTATCTGGTCCAATCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGCAGCATTCCAAGTTCTTTGGGGTCTCTCACTCGTTTAAATTACTTGAAGCTCAGCAGTAACAAGTTAAGTGGACCAATTCCGGAATCTGTTGCAAATATTTCAGGCCTTTCCTTCTTGGATCTATCCAATAATAATCTCAGCGGCCCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTTCATCGTCTAAAGTTTGTGGAATAGTTTCAAAACCAGTTAATGAAACTGGTTCGCCTCAGAAAGATAATGGCCGACATCACTTGATCCTTTCCATAGCTCTAATTGTCAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACGTCCTACGTGCAGCAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAGAGATCCAAATTATACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAACTGATTGGCTTAGCCGTGCACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACGCCAGATGAGAGATTGCTCGTTTATCCATATATGCCAAATGGAAGCGTTGCTGACCGCCTGAGAGATGCAGGCCAGGAAAAGCCAACATTGAATTGGAACAGAAGATTGTGCATTGCCCTTGGTGCAGCTCGTGGACTTGTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCGGTGGTGGGGGATTTTGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCTGTTAGGGGCACTGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACGGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTAACAGGCCAAAAAGCACTAGATGCTGGCAATGGCCAAGTTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAGAAGAGGCTAGATGTGCTGGTTGACAGGGATCTAAAAGGATGTTATGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAGTCACATCCACAACTCAGACCGAAGATGTCCGAGATCTTGAAGGTTGTAGAAGGTCTGGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAGGAAGTGTTTATGAGAATAGAGCTCACAGTTTCTCCACAAAGTACTGTGATATTCATGAAGAGTCTTCATTTGTCATCGAAGCCATGGAGCTTTCAGGACCCCGTTGA 1854 43.42 MEVVKVVLLLFILIWVVSASDSHLSPKGVNYEVAALMSVKNWIRDERRVMQGWDINSVDPCTWNMVACSVEGFVISLEMSNMGLSGTLSPSIGNLSYLRTMFLQNNELSGPIPDDIGELSELQTLDLSNNQFVGSIPSSLGSLTRLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSSKVCGIVSKPVNETGSPQKDNGRHHLILSIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLRDPNYTGEVQFQTEVELIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPTLNWNRRLCIALGAARGLVYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQVRKGMILEWVRTLHEEKRLDVLVDRDLKGCYDAMELEKAVELALQCTQSHPQLRPKMSEILKVVEGLVGQSSQMEESPGGAGSVYENRAHSFSTKYCDIHEESSFVIEAMELSGPR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8548885 8552939 + CmaCh03G013280.1 Cma03g01328 290899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01328 617 Gene3D Phosphorylase Kinase; domain 1 263 368 - -
Cma03g01328 617 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 617 - -
Cma03g01328 617 SMART serkin_6 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01328 617 SUPERFAMILY L domain-like 31 191 - -
Cma03g01328 617 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Cma03g01328 617 Gene3D Transferase(Phosphotransferase) domain 1 369 576 - -
Cma03g01328 617 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Cma03g01328 617 ProSiteProfiles Protein kinase domain profile. 293 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01328 617 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cma03g01328 617 SUPERFAMILY Protein kinase-like (PK-like) 275 565 IPR011009 -
Cma03g01328 617 Gene3D Ribonuclease Inhibitor 29 211 IPR032675 -
Cma03g01328 617 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 617 - -
Cma03g01328 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Cma03g01328 617 Pfam Protein kinase domain 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01328 Cma07g00178 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01328 Cma-Chr3:8548885 Cma12g00024 Cma-Chr12:93850 0 dispersed
Cma03g01328 Cma-Chr3:8548885 Cma07g00178 Cma-Chr7:859468 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68445 PF00069 Pkinase 7.00E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01328 - - mcha:111012268 1114.75