Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01336 ATGATGTCCAAATCGTATACCAATCTTTTAGATTTAGCATCTGGGAATTTTCCCATCATGGGTCGTGAGAAGAAGCGACTTCCACGCGTAATGACTGTTACGGGGGTAATATCAGAGCTTGATGATGAGCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTTGTGCAAGACCGTATAATTATTGTAGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCGGACGATATAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTCAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCATCCGAACAAGATGATGTCTCCCAGCTTTTGTTGGAGAGGTTTAAGTGTGTTCCTGCGTTTTTGCCTCAGGCAATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAACTGTGGCCACTATTCCATTACATGCTTCCGTACTCTGCAACTCATGGTGGTCGGTTTGATCGGTCTCTGTGGGAGGCGTATGTTGCAGCAAATAAAATTTTTTCCCAAAGGGTGATTGAGGTCATAAACCCAGATGATGACTTTGTATGGATTCATGATTACCATTTAATGGTGCTGCCTTCCTTCTTGAGGCGAAGGTTTACAAGATTGAGGATGGGTTTTTTTCTTCACAGTCCATTTCCTTCCTCAGAAATATATAGAACTTTACCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATGCTGACCTTATTGGTTTTCACACTTTCGACTATGCTCGACATTTCTTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACTGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGATAAAGACTGGAGGGTACAGGAGCTCAAGCGGCAGTTTGAAGGGAAAGTTGTGTTACTTGGAGTTGATGATATGGACATTTTCAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAAATGCTAAGGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCATACAGATTGCAAACCCAGCTAGAGGAAAGGGGAAAGATCTTGAGGAAATACGAGAGGAAATACAGGAATGCTGTAAGAGAATTAATGAAAGTTTTGGACAGACAAATTATGAGCCTATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAAAGAGCTGCATATTACACGGTTGCCGAATGTGTTGTAGTCACAGCGGTGAGGGATGGGATGAATCTAACACCTTATGAGTACGTTGTCTGCAGGCAGGGAACCTCTGGATCAGATTATAGTTCAGAATCAAATGGGCCACAGAAGAGCATGCTAGTGATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCTATACGGGTTAACCCATGGAACATCGAAGCTACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAAAAGCAATTGCGCCATGAAAAGCATTATAAATATGTGAGTACACATGATGTGGCGTACTGGTCAAAGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGACGACGGTGCTGGGGAATTGGGTTGGGCTTTGGCTTCAGAGTTGTAGCACTTGATCCCAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCGAGGTCGAAAAGGAGGGCCATACTTTTGGATTATGACGGCACTGTCATGCCACAAACATCAATTGATAAGGCCCCAAGTCGTCAAGTTATTTCAATCATAGATTCTCTTTGCGATGATGTTAGGAATACCGTTTTTGTTGTCAGTGGAAGAGGGCGTGAAAGTTTGGGCAACTGGTTTTCTTCTTGCAATAAACTTGGAATTGCTGCCGAGCATGGCTACTTTATGAGGTGGTCTGCTGATAAGGACTGGGAAAACTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATCGCAGAGCCAGTCATGAAATTATATACAGAAGCAACTGACGGCTCTTCTATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCGGGATGCAGACCCTGATTTTGGTTGCAGTCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTCGCTGTAAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATCTTCACGTCAATGACGGACGCAGGCAGACGAGCTGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGTCATGCAGTCTCAAGTGGCGTCCTCTCTTCCAATACATTAGTTTTTGCCTGCACAGTCGGACAGAAACCAAGCAAGGCCAAGTATTACTTGGATGACACAACTGAGGTCATAAACATGCTTGAAGCCCTTGCAGAAGTTTCTGACATTTCTTCTCCTCCAGAATCCCCTTGA 2553 43.52 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVTGVISELDDEQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDDIGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPQAILSKFYHGFCKQQLWPLFHYMLPYSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVFIQIANPARGKGKDLEEIREEIQECCKRINESFGQTNYEPIVFIDRPVSLTERAAYYTVAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSSESNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSKSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKAPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSSCNKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHRDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMTDAGRRADFVLCIGDDRSDEDMFEIIGHAVSSGVLSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8580070 8583621 + CmaCh03G013360.1 Cma03g01336 290907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01336 850 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Cma03g01336 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
Cma03g01336 850 CDD HAD_TPP 591 832 - -
Cma03g01336 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 842 IPR001830 GO:0003824|GO:0005992
Cma03g01336 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Cma03g01336 850 TIGRFAM T6PP: trehalose-phosphatase 587 838 IPR003337 GO:0003824|GO:0005992
Cma03g01336 850 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED 1 842 - -
Cma03g01336 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Cma03g01336 850 Gene3D Glycogen Phosphorylase B; 54 313 - -
Cma03g01336 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Cma03g01336 850 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 798 IPR006379 -
Cma03g01336 850 Gene3D - 718 845 IPR023214 -
Cma03g01336 850 Gene3D - 589 695 IPR023214 -
Cma03g01336 850 Gene3D Glycogen Phosphorylase B; 314 527 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01336 Cma07g00170 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01336 Cma-Chr3:8580070 Cma04g00086 Cma-Chr4:429400 0 dispersed
Cma11g00105 Cma-Chr11:560642 Cma03g01336 Cma-Chr3:8580070 0 dispersed
Cma16g01058 Cma-Chr16:8103258 Cma03g01336 Cma-Chr3:8580070 1.79E-08 dispersed
Cma11g01907 Cma-Chr11:12613065 Cma03g01336 Cma-Chr3:8580070 0 wgd
Cma19g01006 Cma-Chr19:8674708 Cma03g01336 Cma-Chr3:8580070 0 wgd
Cma03g01336 Cma-Chr3:8580070 Cma07g00170 Cma-Chr7:828739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01336 K16055 - csv:101213082 1657.5