Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01348 | ATGGCTGAGGTTTCTGGATCAACCAATGGACACCACGCTGTTTCTTTCAACATCAAGGATGAATCCACTGCCGTCACCAGCAGACAAGAAGCCGACTGGATCTCTGTTCCTTTCATTCAAAAGTTGATTGCAGAGATTGTGGGGACGTATTTCTTGATATTTGCCGGCGGGGCGTCGGTGGTTGTGAATTTGAGCAAAGACAAAGTCATCACTTTCCCAGGGATTGCAATTGTTTGGGGCTTGGCGGTAATGGTGATGGTTTATTCTGTTGGGCATATCTCCGGTGCTCATTTTAACCCTGCTGTCACCATAGCCTTTGCCACTACCAAGCGATTTCCATGGAAACAGCTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAAGTGGAACACTGAGGCTAATATTCAACGGAGAACAGGACCATTTTTCAGGGACTCTCCCAAGTGACTCATATTTGCAGACCTTTGTGATTGAATTCATAATCACATTTTACCTCATGTTCGTGGTGTCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCTGTTGGCGCCACGGTGCTCCTCAACGTGATGTTTTCAGGGCCAATAACAGGAGCGTCCATGAATCCAGCAAGAAGCTTGGGGCCTGCTATAGTATCAAGGCAGTTCAAAGGGTTATGGATATACATGGTAGCTCCCACGTTTGGGGCAATTGCGGGCGCTCTGGTCTACAATACCATCAGGTTTACAGACAAGCCTCTACGAGAGATCACCAAAAGTGCGTCTTTCCTCAAAGGACAGGGGCGCAATGGTTCGGCTTGA | 828 | 47.71 | MAEVSGSTNGHHAVSFNIKDESTAVTSRQEADWISVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGIAIVWGLAVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQLPAYVIAQVLGSTLASGTLRLIFNGEQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFSGPITGASMNPARSLGPAIVSRQFKGLWIYMVAPTFGAIAGALVYNTIRFTDKPLREITKSASFLKGQGRNGSA | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8618130 | 8619614 | + | CmaCh03G013480.1 | Cma03g01348 | 290919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01348 | 275 | CDD | MIP | 40 | 249 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01348 | 275 | TIGRFAM | MIP: MIP family channel proteins | 44 | 246 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01348 | 275 | PRINTS | Major intrinsic protein family signature | 40 | 59 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01348 | 275 | PRINTS | Major intrinsic protein family signature | 79 | 103 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01348 | 275 | PRINTS | Major intrinsic protein family signature | 116 | 135 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01348 | 275 | PRINTS | Major intrinsic protein family signature | 161 | 179 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01348 | 275 | PRINTS | Major intrinsic protein family signature | 192 | 214 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01348 | 275 | PRINTS | Major intrinsic protein family signature | 229 | 249 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01348 | 275 | Pfam | Major intrinsic protein | 33 | 246 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01348 | 275 | Gene3D | Glycerol uptake facilitator protein. | 6 | 261 | IPR023271 | - | |
Cma03g01348 | 275 | PANTHER | AQUAPORIN NIP2-1 | 3 | 268 | IPR034294 | - | |
Cma03g01348 | 275 | SUPERFAMILY | Aquaporin-like | 34 | 260 | IPR023271 | - | |
Cma03g01348 | 275 | ProSitePatterns | MIP family signature. | 97 | 105 | IPR022357 | - | |
Cma03g01348 | 275 | PANTHER | AQUAPORIN NIP1-1-RELATED | 3 | 268 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01348 | Cma07g00157 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01348 | Cma-Chr3:8618130 | Cma11g01024 | Cma-Chr11:5571213 | 5.12E-75 | dispersed | |
Cma01g00358 | Cma-Chr1:1782726 | Cma03g01348 | Cma-Chr3:8618130 | 1.03E-105 | transposed | |
Cma03g01348 | Cma-Chr3:8618130 | Cma07g00157 | Cma-Chr7:798243 | 3.43E-128 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01348 | K09874 | - | csv:101219297 | 485.723 |