Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01348 ATGGCTGAGGTTTCTGGATCAACCAATGGACACCACGCTGTTTCTTTCAACATCAAGGATGAATCCACTGCCGTCACCAGCAGACAAGAAGCCGACTGGATCTCTGTTCCTTTCATTCAAAAGTTGATTGCAGAGATTGTGGGGACGTATTTCTTGATATTTGCCGGCGGGGCGTCGGTGGTTGTGAATTTGAGCAAAGACAAAGTCATCACTTTCCCAGGGATTGCAATTGTTTGGGGCTTGGCGGTAATGGTGATGGTTTATTCTGTTGGGCATATCTCCGGTGCTCATTTTAACCCTGCTGTCACCATAGCCTTTGCCACTACCAAGCGATTTCCATGGAAACAGCTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAAGTGGAACACTGAGGCTAATATTCAACGGAGAACAGGACCATTTTTCAGGGACTCTCCCAAGTGACTCATATTTGCAGACCTTTGTGATTGAATTCATAATCACATTTTACCTCATGTTCGTGGTGTCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCTGTTGGCGCCACGGTGCTCCTCAACGTGATGTTTTCAGGGCCAATAACAGGAGCGTCCATGAATCCAGCAAGAAGCTTGGGGCCTGCTATAGTATCAAGGCAGTTCAAAGGGTTATGGATATACATGGTAGCTCCCACGTTTGGGGCAATTGCGGGCGCTCTGGTCTACAATACCATCAGGTTTACAGACAAGCCTCTACGAGAGATCACCAAAAGTGCGTCTTTCCTCAAAGGACAGGGGCGCAATGGTTCGGCTTGA 828 47.71 MAEVSGSTNGHHAVSFNIKDESTAVTSRQEADWISVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGIAIVWGLAVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQLPAYVIAQVLGSTLASGTLRLIFNGEQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFSGPITGASMNPARSLGPAIVSRQFKGLWIYMVAPTFGAIAGALVYNTIRFTDKPLREITKSASFLKGQGRNGSA 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8618130 8619614 + CmaCh03G013480.1 Cma03g01348 290919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01348 275 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01348 275 TIGRFAM MIP: MIP family channel proteins 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01348 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01348 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01348 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01348 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01348 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01348 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01348 275 Pfam Major intrinsic protein 33 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01348 275 Gene3D Glycerol uptake facilitator protein. 6 261 IPR023271 -
Cma03g01348 275 PANTHER AQUAPORIN NIP2-1 3 268 IPR034294 -
Cma03g01348 275 SUPERFAMILY Aquaporin-like 34 260 IPR023271 -
Cma03g01348 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Cma03g01348 275 PANTHER AQUAPORIN NIP1-1-RELATED 3 268 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01348 Cma07g00157 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01348 Cma-Chr3:8618130 Cma11g01024 Cma-Chr11:5571213 5.12E-75 dispersed
Cma01g00358 Cma-Chr1:1782726 Cma03g01348 Cma-Chr3:8618130 1.03E-105 transposed
Cma03g01348 Cma-Chr3:8618130 Cma07g00157 Cma-Chr7:798243 3.43E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01348 K09874 - csv:101219297 485.723