Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01354 ATGAACACTGTTCTTTTGGACAATGTCTGTACTCCTCTGTACTTGTTAACTGATCTATTGAAAACCTCGAGCCAGGGTTTAAGCTCCTCCTCCTCTTTCAAATCCAATCTACATTCCTCCGATTTAGACAGATACTTGTATTTCATTCTTCTGGGTTTGATTTTTATATTCCCTCTGATATTTGAGGCAATGAAGAGTCCGGTGAGGTTTAAGTTGGGGAAGCAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTGGTCAAGCAGCACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGATAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTCGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCCGTGCATTACAAGAACCACGATGTGATCAAACTTCTGGAAAAGCATGGTGCAAAGCCTCCGGTGGCTCCCATGCTCGTCAAGAATGCCGGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAGCTTGATTTTACTAACAGTGTGAACAATACCAAGGGAACATTTCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGACGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTTCAGTTTCTGGGTGCTGTTACTCAAAGTTGGCCGATGATGATAGTTACAGAATATTTGCCAAAGGGAGATCTTGCAGCATTATTGGGCAGAAAAGGAACACTAAAAACTATGACCGTTTTGAGACTTGCCCTTCATATTGCAAGGGGGATGAATTATTTGCATGAGAACAAGCCAGCACCAATTATCCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCGGACTTTGGAGTTAGCAAGTTATTGACGGTTAAAGAAGATAAACCTTTGACCTGTTCAGAGACTTCACGGAGATATGAAGCTCCGGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGACGTATTTTCATTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCCGACAAGCGAGATAGTGAAGTTCCTAAATTGTATGCAGCAGGTGAACGTCCACCATTTAAAGCACCACCTAAACGTTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGCTGGAATGAGAAGCCAACTAAAAGACCTACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAATAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATTCTTCCAGAATATTGAGGCGATGTTGAAGAAAGATCGTTCCCGTCAAAGCAGTTTGAATCTATCAACACATTCTTCTGCCAGCAATTCAGGAGATACCAGCACCAAGTATATCAGCTACCAACTTGGAAAGCGTTCGACAAACAGCTATAGACAGAAGTGGCAGGAAAGTACCAACTTGTATAGAACTCAGCATGGTGGAAAGGAAAAGCTTTGCAGAAAAAAATTCCTTCTCCAACCAGCTCTTTTCCTTATCAGGTAA 1734 43.77 MNTVLLDNVCTPLYLLTDLLKTSSQGLSSSSSFKSNLHSSDLDRYLYFILLGLIFIFPLIFEAMKSPVRFKLGKQSSLAPDGHLEDLEELVKQHQTEEGIDSRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAGEVPDYEIDPKELDFTNSVNNTKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLAALLGRKGTLKTMTVLRLALHIARGMNYLHENKPAPIIHRDLEPSNILRDDSGHLKVADFGVSKLLTVKEDKPLTCSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKRDSEVPKLYAAGERPPFKAPPKRYANGLKELIEECWNEKPTKRPTFRQIITQLEFIYNRFGHKRRWKVRPLKFFQNIEAMLKKDRSRQSSLNLSTHSSASNSGDTSTKYISYQLGKRSTNSYRQKWQESTNLYRTQHGGKEKLCRKKFLLQPALFLIR 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8629792 8640106 + CmaCh03G013540.1 Cma03g01354 290925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01354 577 Gene3D - 75 209 IPR036770 -
Cma03g01354 577 CDD STKc_MAP3K-like 228 472 - -
Cma03g01354 577 Gene3D Phosphorylase Kinase; domain 1 211 294 - -
Cma03g01354 577 Pfam Ankyrin repeats (3 copies) 106 194 IPR002110 GO:0005515
Cma03g01354 577 Pfam Protein tyrosine and serine/threonine kinase 228 472 IPR001245 GO:0004672|GO:0006468
Cma03g01354 577 SUPERFAMILY Ankyrin repeat 82 195 IPR036770 -
Cma03g01354 577 Gene3D Transferase(Phosphotransferase) domain 1 295 539 - -
Cma03g01354 577 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 70 502 - -
Cma03g01354 577 ProSiteProfiles Ankyrin repeat profile. 134 166 IPR002110 GO:0005515
Cma03g01354 577 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 70 502 - -
Cma03g01354 577 SUPERFAMILY Protein kinase-like (PK-like) 231 500 IPR011009 -
Cma03g01354 577 SMART ANK_2a 167 196 IPR002110 GO:0005515
Cma03g01354 577 SMART ANK_2a 134 163 IPR002110 GO:0005515
Cma03g01354 577 SMART ANK_2a 101 130 IPR002110 GO:0005515
Cma03g01354 577 ProSiteProfiles Ankyrin repeat region circular profile. 134 166 - -
Cma03g01354 577 ProSiteProfiles Protein kinase domain profile. 184 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01354 Cma18g00441 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00045 Cma-Chr2:224626 Cma03g01354 Cma-Chr3:8629792 0 dispersed
Cma03g01354 Cma-Chr3:8629792 Cma19g00288 Cma-Chr19:2190850 3.29E-134 dispersed
Cma18g00441 Cma-Chr18:2435883 Cma03g01354 Cma-Chr3:8629792 0 wgd
Cma20g00249 Cma-Chr20:1220467 Cma03g01354 Cma-Chr3:8629792 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68446 PF07714 PK_Tyr_Ser-Thr 6.60E-54 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01354 - - csv:101215728 836.639