Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01355 ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGACGAAATGGGCTGCTTAAAAAAGCTTATGAACTTTCTGTTCTCTGTGATGCCGAAGTTGCTCTCATCGTTTTCTCAAGCCGCGGCCGCCTCTATGAGTACGCTAACAACAGTGTGAAGGCAACCATTGATAGATACAAGAAAGCATCCTCAGATTCCTCAAACACTGGATCTACTTCTGAAGCTAATACTCAGTTTTACCAACAAGAAGCTGCCAAACTTCGAGTTCAGATTGGTAACTTGCAGAATTCAAACAGGAACATGCTGGGTGACTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGCCTCGAGAGCAAACTTGAGAAAGGAATCAGCAGGATTAGGTCCAAAAAGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATTGCTGAGAGTGAAAGAAATGCCAACATGATGGGAGGAGAATTCGAGCTGATGCAATCTCATCCCTACGATCCCCGAGACTTCTTCCAAGTGAACGGCTTACAACATAGTCACCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAA 648 42.59 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGDSLSSLSVKDLKSLESKLEKGISRIRSKKEIDLHNNNQLLRAKIAESERNANMMGGEFELMQSHPYDPRDFFQVNGLQHSHQYPRQDNMALQLV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8640127 8643842 + CmaCh03G013550.1 Cma03g01355 290926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01355 215 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Cma03g01355 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 203 - -
Cma03g01355 215 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Cma03g01355 215 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Cma03g01355 215 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cma03g01355 215 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cma03g01355 215 Pfam K-box region 91 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma03g01355 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Cma03g01355 215 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977|GO:0045944
Cma03g01355 215 Gene3D - 21 103 IPR036879 GO:0003677|GO:0046983
Cma03g01355 215 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Cma03g01355 215 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma03g01355 215 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Cma03g01355 215 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 9 203 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01355 Cma13g00575 CCT
Cma03g01355 Cma07g00152 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01355 Cma-Chr3:8640127 Cma07g00152 Cma-Chr7:778548 4.43E-144 dispersed
Cma13g00575 Cma-Chr13:5776852 Cma03g01355 Cma-Chr3:8640127 1.72E-91 wgd
Cma20g00254 Cma-Chr20:1241469 Cma03g01355 Cma-Chr3:8640127 6.68E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34713 PF01486 K-box 2.40E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01355 K09264 - csv:101221430 369.392