Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01355 | ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGACGAAATGGGCTGCTTAAAAAAGCTTATGAACTTTCTGTTCTCTGTGATGCCGAAGTTGCTCTCATCGTTTTCTCAAGCCGCGGCCGCCTCTATGAGTACGCTAACAACAGTGTGAAGGCAACCATTGATAGATACAAGAAAGCATCCTCAGATTCCTCAAACACTGGATCTACTTCTGAAGCTAATACTCAGTTTTACCAACAAGAAGCTGCCAAACTTCGAGTTCAGATTGGTAACTTGCAGAATTCAAACAGGAACATGCTGGGTGACTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGCCTCGAGAGCAAACTTGAGAAAGGAATCAGCAGGATTAGGTCCAAAAAGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATTGCTGAGAGTGAAAGAAATGCCAACATGATGGGAGGAGAATTCGAGCTGATGCAATCTCATCCCTACGATCCCCGAGACTTCTTCCAAGTGAACGGCTTACAACATAGTCACCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAA | 648 | 42.59 | MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGDSLSSLSVKDLKSLESKLEKGISRIRSKKEIDLHNNNQLLRAKIAESERNANMMGGEFELMQSHPYDPRDFFQVNGLQHSHQYPRQDNMALQLV | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8640127 | 8643842 | + | CmaCh03G013550.1 | Cma03g01355 | 290926 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01355 | 215 | ProSiteProfiles | MADS-box domain profile. | 9 | 69 | IPR002100 | GO:0003677|GO:0046983 | |
Cma03g01355 | 215 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 9 | 203 | - | - | |
Cma03g01355 | 215 | SMART | madsneu2 | 9 | 68 | IPR002100 | GO:0003677|GO:0046983 | |
Cma03g01355 | 215 | PRINTS | MADS domain signature | 46 | 67 | IPR002100 | GO:0003677|GO:0046983 | |
Cma03g01355 | 215 | PRINTS | MADS domain signature | 11 | 31 | IPR002100 | GO:0003677|GO:0046983 | |
Cma03g01355 | 215 | PRINTS | MADS domain signature | 31 | 46 | IPR002100 | GO:0003677|GO:0046983 | |
Cma03g01355 | 215 | Pfam | K-box region | 91 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma03g01355 | 215 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 18 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
Cma03g01355 | 215 | CDD | MADS_MEF2_like | 10 | 86 | IPR033896 | GO:0000977|GO:0045944 | |
Cma03g01355 | 215 | Gene3D | - | 21 | 103 | IPR036879 | GO:0003677|GO:0046983 | |
Cma03g01355 | 215 | SUPERFAMILY | SRF-like | 10 | 84 | IPR036879 | GO:0003677|GO:0046983 | |
Cma03g01355 | 215 | ProSiteProfiles | K-box domain profile. | 95 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma03g01355 | 215 | ProSitePatterns | MADS-box domain signature. | 11 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
Cma03g01355 | 215 | PANTHER | FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE | 9 | 203 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01355 | Cma13g00575 | CCT | |
Cma03g01355 | Cma07g00152 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01355 | Cma-Chr3:8640127 | Cma07g00152 | Cma-Chr7:778548 | 4.43E-144 | dispersed | |
Cma13g00575 | Cma-Chr13:5776852 | Cma03g01355 | Cma-Chr3:8640127 | 1.72E-91 | wgd | |
Cma20g00254 | Cma-Chr20:1241469 | Cma03g01355 | Cma-Chr3:8640127 | 6.68E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34713 | PF01486 | K-box | 2.40E-20 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01355 | K09264 | - | csv:101221430 | 369.392 |