Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01377 ATGGAGAAAGAGCCTCTTCTTCCGTATATGAGCCCAAGGGGGAAGCCGCTTCCTCCACCTCCTCAATTATTATGTCCACTCCCTGAAAACGATGAAATTACTCTCCCTATGACACCCACGGAGTTCAAAGACCGCCTGATCTTCGGTCCTTCATCGTCTCCGCAAGACACTTCTCCCATATTCGACGCCTTGACGCTCTCCCTTTCCTCGTCAAGACCCTCTGCTTCATCTTCTCTTCAGGACCCATCTACACCTTTGGCCCCAAAATCCCAATCGCCGTCTCAACAGGCATGGCTTGTGGATTCCAATTACTCATGGCACAAGAGCAACCTCCACCGCTCCAAAACCGCACCTGCCATGGCCGTCATCAACGATGTGAACCATTCGCAAGAGCCCAAACCACAATTTGGTAAGCTATCTATTATCCGCCAAGCTGTTGTTCTTCTAATTCTTTACTTATCATTGGGCGTGCTTATCTATTGGATTAATCGTGATAAGTTTTCGGCTCACGAGACTCACCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACTATGTGCACTATTGGGTATGGAGATATCACGCCCAATAGTGCTGCGACGAAGCTGTTCTCCGTATTGTTTGTGTTGGTGGGATTCGGATTTATTGATATATTACTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGAGGGGTGCAGCGTGAATCCGGGAAATCCTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCTCTGGCCTTGGGTGTTGTGATTCTTTGCATAGGACTTGGCATGGGTGTAATGCATTTTGTTGAAAATCTTGGATGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACAACAGTTGGATATGGTGATCAGGCGTTCAAGTCGATGACTGGTCGTATTTTTGCTTCGATTTGGTTGCTTGTATCGACCCTTGCTGTTGCTCGGGCGTTTCTTTATTTGGCAGAGGCAAGGGTAGATAAGCGGCATAGGATGATGGCAAAGTGGATACTTGGTCAGGATATGACTGTCTCTGAGTTTCTTGCTGCTGATACTGACAACAATGGCTGTGTGAGTAGGTCAGAGTATGTGCTATACAAGCTGAAGGAGATGGGAAAGGTATCAGAGAAAGATGTGATGCAGATATCTAATAACTTTGATAGACTAGACACTGGCAACTGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA 1281 45.2 MEKEPLLPYMSPRGKPLPPPPQLLCPLPENDEITLPMTPTEFKDRLIFGPSSSPQDTSPIFDALTLSLSSSRPSASSSLQDPSTPLAPKSQSPSQQAWLVDSNYSWHKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKLSIIRQAVVLLILYLSLGVLIYWINRDKFSAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRESGKSYIIDVKKGRMRIRMKVALALGVVILCIGLGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADTDNNGCVSRSEYVLYKLKEMGKVSEKDVMQISNNFDRLDTGNCGKITLADLLESHH 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8737808 8741010 + CmaCh03G013770.1 Cma03g01377 290948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01377 426 Pfam Ion channel 148 227 IPR013099 -
Cma03g01377 426 Pfam Ion channel 272 341 IPR013099 -
Cma03g01377 426 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 91 421 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma03g01377 426 Gene3D - 138 238 - -
Cma03g01377 426 MobiDBLite consensus disorder prediction 1 33 - -
Cma03g01377 426 Gene3D - 271 334 - -
Cma03g01377 426 PRINTS Two pore domain K+ channel signature 184 212 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma03g01377 426 PRINTS Two pore domain K+ channel signature 304 313 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma03g01377 426 PANTHER TWO-PORE POTASSIUM CHANNEL 3 91 421 - -
Cma03g01377 426 SUPERFAMILY Voltage-gated potassium channels 141 227 - -
Cma03g01377 426 SUPERFAMILY EF-hand 363 423 IPR011992 -
Cma03g01377 426 Gene3D - 335 426 - -
Cma03g01377 426 MobiDBLite consensus disorder prediction 72 94 - -
Cma03g01377 426 MobiDBLite consensus disorder prediction 11 26 - -
Cma03g01377 426 SUPERFAMILY Voltage-gated potassium channels 256 362 - -
Cma03g01377 426 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01377 Cma07g00133 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01079 Cma-Chr1:7960855 Cma03g01377 Cma-Chr3:8737808 3.67E-68 dispersed
Cma03g01377 Cma-Chr3:8737808 Cma18g00614 Cma-Chr18:5434263 1.54E-62 dispersed
Cma03g01377 Cma-Chr3:8737808 Cma07g00133 Cma-Chr7:688150 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01377 K05389 - csv:101220017 748.429