Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01378 | ATGTCAGATGAAATGTTCAAAGATCTATTTTTGTCGAGCCCTTTTGGATACGGTGGGTTGGGTGATTCAGAAACAGGCTTGGATGAGTACGAGTCTCTAGCGAGAGCTTTTGAGCTGTCCTCGGATTACTCGAATGAAATTTCAGGGACTCCCATGAATTCCTCTGCTTCCTTCTCCTCCTCTGATGCTGGAGCTGACGAGGATGATTCCCTCAAAGAGAAGGATAAGCAGATCAAAGACATGGATGACGGCGGAGAGAGCTCCAAGACCGCGGCTAAATCAAAAAAGAAAGTAGATAAGAAAGAGAGAGAGCCAAGAGTTGCTTTCATGACCAAGAGCGAGGTTGATCATCTTGAAGATGGGTATCGATGGAGAAAATACGGACAGAAGGCTGTCAAGAACAGCGCTTATCCTAGGAGCTATTACAGATGTACGACACAGAAATGCGGAGTGAAGAAACGAGTGGAGAGATCGTATGAAGATCCATCCATAGTAATTACGACGTACGAAGGGCAACACAATCACCCAATTCCCGCGACGTTAAGGGGGAACCTGTCGGCAGCGAGCGGCGCGTTTCAGCCGTCCATGTTGGCACCAATGCCGGTGGTCGGTGGCGTGAGGTATCTTCCACAGCTGATGAACAATACTTCCGTCAACAACAACCAGGCAGTTGGAGGTGGTGACTCCGTTTATTCACAAAGCAGCAGCTTCAACTATCCTTATAACGGACGGCAACAAGACTACGGGCTTCTGCAGGACATTTTTCCGACGGCGCCGCCGTTCTTGAACCGACAACCATGA | 801 | 48.81 | MSDEMFKDLFLSSPFGYGGLGDSETGLDEYESLARAFELSSDYSNEISGTPMNSSASFSSSDAGADEDDSLKEKDKQIKDMDDGGESSKTAAKSKKKVDKKEREPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHNHPIPATLRGNLSAASGAFQPSMLAPMPVVGGVRYLPQLMNNTSVNNNQAVGGGDSVYSQSSSFNYPYNGRQQDYGLLQDIFPTAPPFLNRQP | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8745541 | 8746898 | + | CmaCh03G013780.1 | Cma03g01378 | 290949 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01378 | 266 | SUPERFAMILY | WRKY DNA-binding domain | 110 | 178 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma03g01378 | 266 | MobiDBLite | consensus disorder prediction | 44 | 109 | - | - | |
Cma03g01378 | 266 | Gene3D | WRKY domain | 103 | 179 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma03g01378 | 266 | ProSiteProfiles | WRKY domain profile. | 113 | 178 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma03g01378 | 266 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 44 | 258 | IPR044810 | GO:0003700 | |
Cma03g01378 | 266 | PANTHER | WRKY TRANSCRIPTION FACTOR 81 | 44 | 258 | - | - | |
Cma03g01378 | 266 | Pfam | WRKY DNA -binding domain | 119 | 176 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma03g01378 | 266 | MobiDBLite | consensus disorder prediction | 65 | 109 | - | - | |
Cma03g01378 | 266 | MobiDBLite | consensus disorder prediction | 44 | 64 | - | - | |
Cma03g01378 | 266 | SMART | WRKY_cls | 118 | 177 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01378 | Cma07g00132 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01378 | Cma-Chr3:8745541 | Cma19g01082 | Cma-Chr19:9010129 | 1.92E-57 | dispersed | |
Cma20g00259 | Cma-Chr20:1265843 | Cma03g01378 | Cma-Chr3:8745541 | 1.64E-31 | wgd | |
Cma03g01378 | Cma-Chr3:8745541 | Cma07g00132 | Cma-Chr7:683658 | 4.77E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34714 | PF03106 | WRKY | 1.50E-25 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01378 | - | - | cmo:103484390 | 347.821 |