Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01378 ATGTCAGATGAAATGTTCAAAGATCTATTTTTGTCGAGCCCTTTTGGATACGGTGGGTTGGGTGATTCAGAAACAGGCTTGGATGAGTACGAGTCTCTAGCGAGAGCTTTTGAGCTGTCCTCGGATTACTCGAATGAAATTTCAGGGACTCCCATGAATTCCTCTGCTTCCTTCTCCTCCTCTGATGCTGGAGCTGACGAGGATGATTCCCTCAAAGAGAAGGATAAGCAGATCAAAGACATGGATGACGGCGGAGAGAGCTCCAAGACCGCGGCTAAATCAAAAAAGAAAGTAGATAAGAAAGAGAGAGAGCCAAGAGTTGCTTTCATGACCAAGAGCGAGGTTGATCATCTTGAAGATGGGTATCGATGGAGAAAATACGGACAGAAGGCTGTCAAGAACAGCGCTTATCCTAGGAGCTATTACAGATGTACGACACAGAAATGCGGAGTGAAGAAACGAGTGGAGAGATCGTATGAAGATCCATCCATAGTAATTACGACGTACGAAGGGCAACACAATCACCCAATTCCCGCGACGTTAAGGGGGAACCTGTCGGCAGCGAGCGGCGCGTTTCAGCCGTCCATGTTGGCACCAATGCCGGTGGTCGGTGGCGTGAGGTATCTTCCACAGCTGATGAACAATACTTCCGTCAACAACAACCAGGCAGTTGGAGGTGGTGACTCCGTTTATTCACAAAGCAGCAGCTTCAACTATCCTTATAACGGACGGCAACAAGACTACGGGCTTCTGCAGGACATTTTTCCGACGGCGCCGCCGTTCTTGAACCGACAACCATGA 801 48.81 MSDEMFKDLFLSSPFGYGGLGDSETGLDEYESLARAFELSSDYSNEISGTPMNSSASFSSSDAGADEDDSLKEKDKQIKDMDDGGESSKTAAKSKKKVDKKEREPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHNHPIPATLRGNLSAASGAFQPSMLAPMPVVGGVRYLPQLMNNTSVNNNQAVGGGDSVYSQSSSFNYPYNGRQQDYGLLQDIFPTAPPFLNRQP 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8745541 8746898 + CmaCh03G013780.1 Cma03g01378 290949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01378 266 SUPERFAMILY WRKY DNA-binding domain 110 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma03g01378 266 MobiDBLite consensus disorder prediction 44 109 - -
Cma03g01378 266 Gene3D WRKY domain 103 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma03g01378 266 ProSiteProfiles WRKY domain profile. 113 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g01378 266 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 44 258 IPR044810 GO:0003700
Cma03g01378 266 PANTHER WRKY TRANSCRIPTION FACTOR 81 44 258 - -
Cma03g01378 266 Pfam WRKY DNA -binding domain 119 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g01378 266 MobiDBLite consensus disorder prediction 65 109 - -
Cma03g01378 266 MobiDBLite consensus disorder prediction 44 64 - -
Cma03g01378 266 SMART WRKY_cls 118 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01378 Cma07g00132 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01378 Cma-Chr3:8745541 Cma19g01082 Cma-Chr19:9010129 1.92E-57 dispersed
Cma20g00259 Cma-Chr20:1265843 Cma03g01378 Cma-Chr3:8745541 1.64E-31 wgd
Cma03g01378 Cma-Chr3:8745541 Cma07g00132 Cma-Chr7:683658 4.77E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34714 PF03106 WRKY 1.50E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01378 - - cmo:103484390 347.821