Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01380 ATGGCTGCTTCTACAATGGCTCTCTCCTCCCCATCTCTGGCTGGGAAGGCCGTGAAGCTCTCCCCCAACACCACTGACATTCAGGGCAATGCAAGAGTCAGCATGAGGAAGACCGCCAGCAAGTCGGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGTCCTACCTCACTGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGACCCCGAGACCTTCGCCAAGAACCGTGAGCTGGAAGTGATCCACTCCAGATGGGCCATGCTCGGAGCTTTGGGCTGTGTGTTCCCCGAGCTTCTGTCCCGCAATGGCGTGAAGTTCGGCGAGGCTGTTTGGTTCAAGGCTGGATCTCAGATCTTCAGCGAGGGAGGCCTCGACTACTTGGGCAACCCCAGCCTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGAGGCCCACTCGGGGAGGTCGTCGACCCCATCTACCCAGGTGGAAGCTTCGACCCGTTGGGTCTTGCTGACGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGCTGGCCATGTTCTCCATGTTCGGATTCTTCGTTCAGGCCATCGTCACCGGAAAGGGTCCATTGGAAAACTTGGCTGACCACCTTGCCGACCCAGTCAACAACAACGCATGGGCCTACGCCACAAACTTTGTCCCTGGAAAGTGA 798 58.77 MAASTMALSSPSLAGKAVKLSPNTTDIQGNARVSMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8755528 8756325 - CmaCh03G013800.1 Cma03g01380 290951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01380 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
Cma03g01380 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cma03g01380 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Cma03g01380 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Cma03g01380 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01380 Cma07g00129 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01380 Cma-Chr3:8755528 Cma07g00129 Cma-Chr7:663366 0 dispersed
Cma03g01380 Cma-Chr3:8755528 Cma03g01381 Cma-Chr3:8756896 0 tandem
Cma13g00541 Cma-Chr13:5617065 Cma03g01380 Cma-Chr3:8755528 0 transposed
Cma20g00260 Cma-Chr20:1270014 Cma03g01380 Cma-Chr3:8755528 6.79E-177 wgd
Cma03g01380 Cma-Chr3:8755528 Cma07g00128 Cma-Chr7:661812 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01380 K08912 - csv:101221671 524.242