Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01388 ATGGACGTTGGTGAAGAAATTAGGGCAGCTCACAAGCGAGGCTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGCCTCATAATCAACATTTCTGATCTTCTCTCAATTACATTCTTGTTCGATTGGAAATTTACAGTAATATGGATTCTATATAAAATTCTGAAACTAATAAGGTCTATTGTCTTAAGCTTTAAAACTACAATCACACTGTCCTTTAATTTTGGAATTATCTTCGGTTATATACATGGTGTTGGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACTAGGAGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATAGGCTTGCCCACTGGATCTGTGTATCCCACAAGGGATGAAAATGGCAACTTGTTGATTACCGAGTATGGCTTGTGTGGATATAAAGATCATCAAACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCGCCTGGTCAGCTTCCACGAACAGTGGATGTCATAGTTGAAGATGACTTAGCTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATGTATAAAGCTCTTCCAGGAAAAACCAAGGGCAGCTTGAACGGAGTGTTCAGTCTCAACTGTTTCTCTACCATGGAAATCGACGATCCTCCTACTGAACCTGTACTTGATCTGTCTGCACAAAGAATAGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACTTGGATGTTAATCTTTTGCAGACATTGAGAATATCGTTAATGCTGCAGCAGATACTCGCTACAGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGCAATGATAGCTGATGGCGTGGTGCATATGACATCTTAA 942 40.45 MDVGEEIRAAHKRGFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLLSITFLFDWKFTVIWILYKILKLIRSIVLSFKTTITLSFNFGIIFGYIHGVGSLVRPKVVKSVHFCPTTRSFTSREYRDITSNIGLPTGSVYPTRDENGNLLITEYGLCGYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLADCCKPGDRVAIVGMYKALPGKTKGSLNGVFSLNCFSTMEIDDPPTEPVLDLSAQRIEAFNSLFGQHMRANHLDVNLLQTLRISLMLQQILATAEIMLLLQRLQDDNRAMIADGVVHMTS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8775195 8777035 + CmaCh03G013880.1 Cma03g01388 290959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01388 313 Gene3D - 4 61 - -
Cma03g01388 313 SUPERFAMILY Nucleic acid-binding proteins 13 219 IPR012340 -
Cma03g01388 313 Pfam MCM OB domain 103 212 IPR033762 -
Cma03g01388 313 Gene3D - 103 212 IPR012340 -
Cma03g01388 313 PANTHER DNA REPLICATION LICENSING FACTOR MCM3 HOMOLOG 3 101 225 - -
Cma03g01388 313 PANTHER DNA REPLICATION LICENSING FACTOR MCM3 HOMOLOG 3 4 52 - -
Cma03g01388 313 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 101 225 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma03g01388 313 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 4 52 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma03g01388 313 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 154 168 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma03g01388 313 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 180 192 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cma03g01388 313 SMART mcm 69 309 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma03g01388 313 Gene3D - 108 162 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01388 Cma07g00117 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01388 Cma-Chr3:8775195 Cma19g00684 Cma-Chr19:7093951 1.02E-08 dispersed
Cma03g01388 Cma-Chr3:8775195 Cma07g00117 Cma-Chr7:626424 6.82E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01388 K02541 - csv:101210889 313.538