Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01424 ATGGCTTCCAGGTCGAGCAGTCATACCAAAACGCGGGTGGGGAGATATGAGCTGGGGCGAACCCTTGGAGAGGGCAGCTTCGCGAAGGTTAAGTTCGCTCGGAATTGCGAGACTGGGGAGAACGTCGCCATTAAAATCCTCAACAAAGAGGATATTCTCAAGCACAAGATGATCGGGCAGATTAAACGTGAAATATCAACGATGAAACTCATTAGACATCCAAATGTCATTCGAATGTATGAGGTGATGGCTAGCAAAACCAAGATATATATTGTTTTGGAATTTGTAACTGGTGGAGAACTATTCAACAAAATTGCATGTAGTGGAAGATTCAAAGAAGATGAAGCAAGAAAATATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCATAGCAGAGGCGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCCAGTGGCGTTCTAAAAGTTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCACACAACATGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGCTACTGTGGTGCAAAGGCGGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTATTTGCCATTTGAAGAAGCCAGTCTCGTGGCATTGTATAAAAAGATATTCAAGGCTGACTTCAAATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGAATCCTCGATCCGAATCCGTCAACTAGAATTACAATTGCTGAGGTTCTTGAGAATGATTGGTTTAAGAAAGGATACAAGCCACCCACTTTCGAAAACGACGAAATCGTTCTTGATGACATTGACGACATCTTTAATGAATCAGGGGTCACTCATAACCTTGTAGTAGAGAAGAGAGAAGAAGGGCTCGCATCCCCTGCATCACCTGTCACCATGAATGCATTCGAGCTCATCTCGAAATCTCAGGGTCTCAACCTTGCCACTCTGTTTGAGAAGCAAATGGGGCTATCTAAACGTGAAAAAAGTTTCACATCCCATTGTCCAGCAGATGAAATCATTTCCAAGATAAAAAAGACAGCAGTTCCTATGGGTTTTGATGTGAAGATCAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCAGTTGCAACAGAGATTTTTCAGGTCGCTCCATCGTTACATATGGTAGAGCTCCGCAAAGCTGGAGGGGATACTTTAGAATTTCACAAGTTCTATAATAACCTCTCAACTGGACTGAAAGATGTTGTATGGCAAACCGGAGACGAGACGGAGCAGGAAAGTAATGATACTCGTCCAGTTCTTATACCTAATATTCTCTCTTTGCATCCCTCGGAATCTGATCGGCAAGCTCCAGGATGCAGAGAAATCATGTACTTGGCTTATCCCACTTTTCATGGTTTAGGACGTCAAATCCATCAAAGCAGCTGTGCAGTTGAGGAACAGCTTGATCCATTCTCACTTGTTGCAGACGAGTTATCGCTTCTTGCCAATAGACTACGGGCAATGGTAGTGGCTGAGGTTCCGAAACTTGCTTCTGCTGCCGAATATTTCTTCAAATTGGGAGTTGAAGGGAAGAGATTTCGTCCAACGGTCTTATTGCTGATGGCAACTGCTTTAAATATGCCAGTACCTAAACCTCTTCCTCATTTGGTTAGAGACAATTTGACAATGGATCTACGCACAAGACAACAATGTGTGGCCGAAATCACAGAAATGATTCACATATCAGTTTTAGCTGGGGACTTTTTGCTCTCTCGAGCTTGTGTTGCACTTGCCTCTTTAAAAAACACAGAGGTGGTGTCATTAATAGCACAAGTTGTTGAACATCTCGTGACTGGTGAAACCATGCAAATGACCACTACATCTGATCAACGTTACAGGAAAAAGGAGAGCGATAGTAGTGATAAGAAGGTTGTGAATAGTGGAGTCTTCGATAATCAAATGCACAACAGCATGGAATATTACATGCAGAAGACGTATTATAAGACTGCATCATTGATTTCTAACAGTTGCAAATCTGTAGCCCTTCTTGCTGGGCAAACAGCAGAAGTTGCAATGTTGGCTTATGAGTATGGAAAAAATCTGGGGTTAGCGTATCAACTGATCGATGATGTTCTCGACTTCACTGGGACTTCAGCTTCACTTGGAAAGGGTTCTTTATCAGATATACGCCACGGAATCATCACAGCTCCATTATTATTTGCCATGGAAGAGTTTCCCCAGTTGCGTACAGTTGTGGAACGTGGTTTTGACAATCCTGAAAACGTTGATAATGCAATGGAGTACCTTGGTAAGAGCCGTGGAATTCAACGTGCAAAAGAGCTAGCAGAAAAACATGCCAATCTGGCTGCAGAAGCTATTGATTCTCTACCTGAGAACGATGACGAAGACGTGAGAAAGTCGAGAAGGGCACTTGTAGATCTCACTCGAAGAGTCATTACAAGAACGAAGTGA 2523 42.65 MASRSSSHTKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILNKEDILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFNKIACSGRFKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKVSDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYCGAKADLWSCGVILFVLMAGYLPFEEASLVALYKKIFKADFKCPPWFSSSAKKLIKRILDPNPSTRITIAEVLENDWFKKGYKPPTFENDEIVLDDIDDIFNESGVTHNLVVEKREEGLASPASPVTMNAFELISKSQGLNLATLFEKQMGLSKREKSFTSHCPADEIISKIKKTAVPMGFDVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHMVELRKAGGDTLEFHKFYNNLSTGLKDVVWQTGDETEQESNDTRPVLIPNILSLHPSESDRQAPGCREIMYLAYPTFHGLGRQIHQSSCAVEEQLDPFSLVADELSLLANRLRAMVVAEVPKLASAAEYFFKLGVEGKRFRPTVLLLMATALNMPVPKPLPHLVRDNLTMDLRTRQQCVAEITEMIHISVLAGDFLLSRACVALASLKNTEVVSLIAQVVEHLVTGETMQMTTTSDQRYRKKESDSSDKKVVNSGVFDNQMHNSMEYYMQKTYYKTASLISNSCKSVALLAGQTAEVAMLAYEYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPLLFAMEEFPQLRTVVERGFDNPENVDNAMEYLGKSRGIQRAKELAEKHANLAAEAIDSLPENDDEDVRKSRRALVDLTRRVITRTK 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8903484 8923120 + CmaCh03G014240.1 Cma03g01424 290995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01424 840 PANTHER SERINE/THREONINE KINASE 9 446 - -
Cma03g01424 840 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Cma03g01424 840 SUPERFAMILY Protein kinase-like (PK-like) 13 272 IPR011009 -
Cma03g01424 840 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 446 - -
Cma03g01424 840 Pfam Polyprenyl synthetase 598 785 IPR000092 GO:0008299
Cma03g01424 840 CDD STKc_SnRK3 15 270 - -
Cma03g01424 840 CDD CIPK_C 322 437 - -
Cma03g01424 840 CDD Trans_IPPS_HT 528 838 IPR000092 GO:0008299
Cma03g01424 840 Pfam NAF domain 318 377 IPR004041 GO:0007165
Cma03g01424 840 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Cma03g01424 840 SUPERFAMILY Terpenoid synthases 503 839 IPR008949 -
Cma03g01424 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cma03g01424 840 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01424 840 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01424 840 Gene3D Farnesyl Diphosphate Synthase 499 599 IPR008949 -
Cma03g01424 840 Gene3D Farnesyl Diphosphate Synthase 600 840 IPR008949 -
Cma03g01424 840 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cma03g01424 840 ProSitePatterns Polyprenyl synthases signature 2. 718 730 IPR033749 -
Cma03g01424 840 Gene3D Transferase(Phosphotransferase) domain 1 96 278 - -
Cma03g01424 840 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01424 840 Gene3D Kinase associated domain 1, KA1 316 441 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01424 Cma13g00516 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01191 Cma-Chr2:7043044 Cma03g01424 Cma-Chr3:8903484 0 dispersed
Cma03g01424 Cma-Chr3:8903484 Cma14g02137 Cma-Chr14:14655135 0 dispersed
Cma09g00623 Cma-Chr9:2930397 Cma03g01424 Cma-Chr3:8903484 3.52E-51 dispersed
Cma13g00516 Cma-Chr13:5462466 Cma03g01424 Cma-Chr3:8903484 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68447 PF00069 Pkinase 1.70E-74 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01424 - - csv:101214052 814.298