Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01429 ATGAGGCTTTCAAGTGCTGGTTTTAGTCCTCAGCCTCCGGAAGGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCCTGTGCGGGCCCCCTTGTTTCTCTCCCTGCTGTTGGAAGCCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTAGATGCCCATATACCCAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTCACAATGCATGCAGATGTCGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCACTCAGTGCTCAAGAACAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGCGCCCCCAGCAAACAACCAACCAATTATTTTTGCAAAACATTGACAGCAAGTGACACGAGTACACATGGAGGATTTTCTGTTCCTCGTCGAGCTGCCGAGAAAGTGTTCCCGCCATTGGACTTTTCTCAGCAGCCACCTGCTCAGGAGTTGATCGCCAGGGATCTGCACGAGAATGAATGGAAATTTAGGCATATTTTTCGGGGCCAGCCCAAAAGGCATCTTCTTACGACTGGATGGAGTGTGTTCGTAAGTGCTAAGAGGCTCGTTGCTGGTGATTCGGTTATCTTCATTTGGAATGAGAAGAATCAGTTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTGATGCCCTCGTCGGTTTTATCTAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGAGCTTGCCCATCAGAGTTCATCATACCTCTGGCTAAGTATGTCAAAGCTGTGTACCATACCCGTGTCTCCGTCGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGCGTTCGTCGTTACATGGGCACTATTACTGGCATCAGCGATTTAGATTCGACCCGGTGGCCGAATTCACACTGGCGGTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTGTCATTATGGGAGATCGAACCACTTACGACCTTCCCACTGTATCCTTCTCCATTTTCCCTCAGGCTTAAGCGACCGTGGCCAACTGGATTTCCTTCTTTCCATGGTCTAAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTAAGGGGGGATGGTCTAGATCGTGGGATTCAAGCTATGAACTTCCCTGGCATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTATGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGTCCAGGCTGCTTCGCTTCTTCAATTTCAACAAACCCAAACTCTTCCGAACAGGCCTGCTACTTTCATGCCGCCTCCGATATTGCAGCAGCCTCAACCGACGTTTATTCAGGGCGACGATAACCAACGTCTCTCTCATTCTCAGGCTCAAACCCTGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAATCAGCAGCAGCAGCAACAGCAAGTGTTTGATCACCAACAAATCCCAAGTACCATCACTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAAGCTCAATCCCTGCAAACGACTCCTCCGTTATGTCGTCAGCAGAGTTTTTCCGATTCAAATCCCAACCATGTGACGAGTCCTATCATTTCACCCTTGCACAGCCTGTTAGGGTCGTTTCCGCAAGATGAATCATCTCAGTTGCTCAATCTTCCTCGAACCAATCCCATGGTACATTCATCTACATGGCCATCAAAGCGAGCTGCAGTCGATCCTCTCCTCTCTTCTGTAAATTCTCAGTTTGTTCTTCCCCAAGGGGTAAATATGGGGACAACTCAGACGAACATCTCTCAGAATGCTATTTCGTTACCGCCTTTTCCTGGTCGAGAGTGTTCATTAGATCAAGGGAACACCGATCCACAGAGTAATCTTCTTTTTGGTGTCAATATAGAGCCTTCAAGTCTTCTAATGCAGAGTGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAACTATGTGAATACTGCTGCTTCCAACTTCTCAGCCAATCCGACCGGGACGCCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCATCAACCAGAACCTTTGTAAAGGTTTACAAGGCAGGGTCCTTGGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAATTACGCAGTGAGCTCGCTCACATGTTCGGTCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTCGACCGGGAAAATGACGTTCTTCTTCTCGGGGACGATCCCTGGCCCGAGTTCGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACAAGACCTAGAGCTCTTGAACTCGGTCCCAATTCAGAGGCTCTCGAATGGCAGCTGTGATAACTATGCCAACAGACAGGAGTCGTCCAGAAACTTGAGTACCGGGATAACTTCTGTCGGGTCGCTCGAGTATTAA 2676 48.13 MRLSSAGFSPQPPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPLYPSPFSLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQAMNFPGIGVAPWMQPRLDASMVGMQPEIYQAMAAAALQEMRTVDPAKVQAASLLQFQQTQTLPNRPATFMPPPILQQPQPTFIQGDDNQRLSHSQAQTLPTVLQQEIKHQTFNNQQQQQQQVFDHQQIPSTITTMSQFSSASQSQAQSLQTTPPLCRQQSFSDSNPNHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMVHSSTWPSKRAAVDPLLSSVNSQFVLPQGVNMGTTQTNISQNAISLPPFPGRECSLDQGNTDPQSNLLFGVNIEPSSLLMQSGMPNLRGICSDSDSTAIPFSSNYVNTAASNFSANPTGTPSNCIEDSGFLQSPENTGQVNPSTRTFVKVYKAGSLGRSLDISKFSSYHQLRSELAHMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQDLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8950035 8954987 - CmaCh03G014290.1 Cma03g01429 291000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01429 891 MobiDBLite consensus disorder prediction 546 579 - -
Cma03g01429 891 PANTHER AUXIN RESPONSE FACTOR 6 1 869 - -
Cma03g01429 891 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma03g01429 891 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cma03g01429 891 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Cma03g01429 891 ProSiteProfiles PB1 domain profile. 757 841 IPR000270 GO:0005515
Cma03g01429 891 Gene3D - 291 363 - -
Cma03g01429 891 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cma03g01429 891 SUPERFAMILY CAD & PB1 domains 748 832 - -
Cma03g01429 891 SMART B3_2 127 229 IPR003340 GO:0003677
Cma03g01429 891 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cma03g01429 891 Gene3D - 753 846 - -
Cma03g01429 891 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 869 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma03g01429 891 Gene3D - 125 228 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01429 Cma18g00491 CCT
Cma03g01429 Cma13g00511 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01429 Cma-Chr3:8950035 Cma04g02256 Cma-Chr4:15752330 0 dispersed
Cma13g00511 Cma-Chr13:5418480 Cma03g01429 Cma-Chr3:8950035 0 wgd
Cma18g00491 Cma-Chr18:2810959 Cma03g01429 Cma-Chr3:8950035 0 wgd
Cma03g01429 Cma-Chr3:8950035 Cma07g00079 Cma-Chr7:469263 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34718 PF02362 B3 1.00E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01429 - - csv:101210406 1634.39