Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01446 ATGAAGGAGAGAGGAGGCTCTCTTGGAGGAGAGAGCCTGCCCGTTTGCTGCACAACATCTATGGCGCTTCTCATGCATAAAGAGATGGGTTCCAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCTAAGCCCAGTTCCCTCAAAAGGCAGCAGCTCATTAGAGAGTGCCCGATCCTTTCTAACATTGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAAAGGAAGGAATCTTCTCGGCTCCAGAGCGTTAATAGAAAGTTGTCAGCGATGAACAAATTGTTGATGGAGGAGAATGACCGCTTACAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATGTCCGCCAGAAACTTAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATCCCAATAGGGATGTCAACAACCCAGCTGGTCTTCTAGCGATAGCTGAGGAGACCCTGGCGGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCCATCGGAATCGTTGCTGTTTCCCGCAACTGCAGCGGGGTGGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATTCTCAAAGATCGCCTTTCCTGGTATCGTGACTGCCGATGTCTTAACGTTGCAAGTGTTATTCCTACGGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACTTACGCTCCAACTACATTAGCAGCAGCACGCGACTTCTGGACTATGAGATATACGACAAGTTTAGAAGATGGCAGTGTAGTGGTTTGTGAGAGGTCATTGACTTCTTCTACTGGTGGCCCAGCAGGGCCTCCGCCATCTACTTTTGTTAGAGCTGAGATGCTTCCTAGTGGCTACTTAATACGAGCGTGCGAGGGTGATGGATCGATTATTCACATTGTCGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTACGAGTCATCCAAGATCCTTGCTCAGAAAATGACAACTGCTGCATTGCGTCACGTTAGACAAATTTCTCAAGAGACTAATGGAGAGATTCAATACACTGGTGGACGTCAACCCGCTGTACTGCGGACATTCAGTCAAAAACTTTGCAGGGGTTTCAACGACGCTGTTAATGGGTTTGCTGATGATGGTTGGTCGCCTATGGGCAGTGACGGTTTGGAGGATGTGACAATTGTCATAAATTCATCAGCAAATATGTTTCCCGGATCCCAGTATAACACATCAATGTATCCCTCTTATGGTGGAGGAGTGATGTGTGCAAAAGCGTCGATGTTACTTCAGGACGTGCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCCTACTGTGCCGCAAGTTTAAAAGCCAGTCCATATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAGGTTATATTGCCTCTTGCTTCTACTGTGGAGCATGAGGAGTTTTTGGAGGTGGTTCGGCTGGAAGGCCTTGCATTCTCTCCCGATGACGTTGCTTTGGCTGGCCGAGATATGTACTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCGCCTATAGATGAATCCTTTGCGGATGATGCTCCATTACTTCCGTCAGGATTTCGTGTCATCCCACTGGATCCGAAAACAGATGATCCTACTGCTGCTCGAACATTGGATTTGGCCTCTACTCTTGAAGTTGGTGCCAATGCTGCACGTTCTGCTGGTCAAACTGATTTGAGCAGCTACAATCTTCGTTCAGTCTTGACCATCGCTTTCCAGTTCACTTTTGAGAATCACTTGCAGGAAAATGTGGCTGCAATGGCCCGACAATATGTCCGTAGTGTTGTCGGGTCCGTTCAAAGGGTTTCCATGGCCATTGCCCCATCTCGGTTGAGTTCCAATATGGGACTAAAGCCCCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGTTACAGGATCCATGTTGGATCTGAGCTCCTTCAAGCTGATTCTCAGTCTGGGGGGGATGCCATGTTGAAGCTGCTGTGGCACCACTCCGATGCAATCATGTGTTGCTCTGTAAAAACCAACGCATCTGCTGTGTTCACCTTCGCTAACCAGGCTGGTTTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTGGATGAGGCAGGTCGGAAGATTCTCTGCACTGAGTTCCCCAAAATAATGCAACAGGGATTCACAAATCTTCCATCTGGTATTTGCATATCGAGTATGGGCCGTCCCATTTCTTACGAGCAAGCCATTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTAGCTTTCATGTTCATAAACTGGTCCTTTGTGTGA 2589 47.93 MKERGGSLGGESLPVCCTTSMALLMHKEMGSSKYVRYTPEQVEALERVYAECPKPSSLKRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYVRQKLSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVASVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSVVVCERSLTSSTGGPAGPPPSTFVRAEMLPSGYLIRACEGDGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTTAALRHVRQISQETNGEIQYTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGLEDVTIVINSSANMFPGSQYNTSMYPSYGGGVMCAKASMLLQDVPPALLVRFLREHRSEWADYGVDAYCAASLKASPYAVPCARPGGFPSSQVILPLASTVEHEEFLEVVRLEGLAFSPDDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDDPTAARTLDLASTLEVGANAARSAGQTDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVSMAIAPSRLSSNMGLKPLPGSPEALTLARWICRSYRIHVGSELLQADSQSGGDAMLKLLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCTEFPKIMQQGFTNLPSGICISSMGRPISYEQAIAWKVLNDDDSNHCLAFMFINWSFV 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9047294 9052368 - CmaCh03G014460.1 Cma03g01446 291017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01446 862 ProSiteProfiles START domain profile. 171 399 IPR002913 GO:0008289
Cma03g01446 862 SUPERFAMILY Bet v1-like 181 391 - -
Cma03g01446 862 ProSiteProfiles 'Homeobox' domain profile. 28 92 IPR001356 GO:0003677
Cma03g01446 862 SMART START_1 180 390 IPR002913 GO:0008289
Cma03g01446 862 MobiDBLite consensus disorder prediction 138 171 - -
Cma03g01446 862 Gene3D - 214 397 IPR023393 -
Cma03g01446 862 Coils Coil 98 122 - -
Cma03g01446 862 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX32 29 862 - -
Cma03g01446 862 CDD bZIP 85 124 - -
Cma03g01446 862 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 29 862 IPR044830 GO:0003700
Cma03g01446 862 CDD homeodomain 33 93 IPR001356 GO:0003677
Cma03g01446 862 MobiDBLite consensus disorder prediction 138 174 - -
Cma03g01446 862 CDD START_ArGLABRA2_like 175 390 - -
Cma03g01446 862 Pfam Homeodomain 33 91 IPR001356 GO:0003677
Cma03g01446 862 Pfam START domain 181 389 IPR002913 GO:0008289
Cma03g01446 862 SMART HOX_1 30 96 IPR001356 GO:0003677
Cma03g01446 862 SUPERFAMILY Homeodomain-like 33 94 IPR009057 -
Cma03g01446 862 Gene3D - 26 100 - -
Cma03g01446 862 Pfam MEKHLA domain 716 861 IPR013978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01446 Cma-Chr3:9047294 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma13g00495 Cma-Chr13:5295933 Cma03g01446 Cma-Chr3:9047294 0 wgd
Cma03g01446 Cma-Chr3:9047294 Cma07g00063 Cma-Chr7:343575 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34719 PF01852 START 2.70E-48 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01446 K09338 - csv:101210154 1566.98