Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01447 ATGCTCTTATTGGATTCTGAGCTTCCTCTGTTCGCTCTTCTTAAACTAAGAAATCAAGGCGAAGAAAGACGACGAAAAAACTACAACAAACACACAGTCTTCAGTTGCAGAAGAAGAAAAAACGAATTTGGGGATAATGGTGAGGCTGATGATCAGCAAAAGTACTCTGATTCTCACAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCATCATCACAACCCCAAATCAGTATGTAGCACCTCCTCAAGTTGGAGCTGGACATTCTATGGCACCCCCTGCTTATCCATTTCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGACTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTACGACGTCGACAATCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGTTTTTAACTGCGTTGCTTCAATATGTTGTGCAGCCCTACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGTCGGTTTCTCAAATCAAATAAGAATGAGAACCAACAAAAAGAAGTGGCATCAGGTGATAAAGAACTGACGTCTGAGGCATTGTTGGAGAATGGTGATCAGCGCATGTCAACAACCCTGCAACAGATTGGCACTGTACAGATTAAAGCTGATGTTGCTGAAACTTTACTGGGAAGCGTTTTAATGGAGCAAAGGAGATGGAGACGACGAGAGGTCAGGTCTGGGTTCTTATTGAATGTACAAAAAGAACACACATTCTTAGTGTTTGGTCTTGTTTTAGGAAGGAAAGGAGTTGATGCAATATACCCGTGA 945 42.33 MLLLDSELPLFALLKLRNQGEERRRKNYNKHTVFSCRRRKNEFGDNGEADDQQKYSDSHNHSSSVINGLNQPIITTPNQYVAPPQVGAGHSMAPPAYPFPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKFLTALLQYVVQPYLHESRHLHALRRARGCGGRFLKSNKNENQQKEVASGDKELTSEALLENGDQRMSTTLQQIGTVQIKADVAETLLGSVLMEQRRWRRREVRSGFLLNVQKEHTFLVFGLVLGRKGVDAIYP 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9056189 9064562 - CmaCh03G014470.1 Cma03g01447 291018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01447 314 SMART cbf3 145 217 IPR001289 GO:0003700|GO:0006355
Cma03g01447 314 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 148 214 IPR001289 GO:0003700|GO:0006355
Cma03g01447 314 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 42 236 - -
Cma03g01447 314 ProSiteProfiles NF-YA/HAP2 family profile. 146 217 IPR001289 GO:0003700|GO:0006355
Cma03g01447 314 MobiDBLite consensus disorder prediction 41 57 - -
Cma03g01447 314 ProSitePatterns NF-YA/HAP2 subunit signature. 151 171 IPR018362 GO:0003677|GO:0016602
Cma03g01447 314 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 42 236 IPR001289 GO:0003700|GO:0006355
Cma03g01447 314 MobiDBLite consensus disorder prediction 41 63 - -
Cma03g01447 314 Gene3D - 146 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01253 Cma-Chr2:7361987 Cma03g01447 Cma-Chr3:9056189 3.16E-32 dispersed
Cma03g01447 Cma-Chr3:9056189 Cma05g01413 Cma-Chr5:10511813 5.13E-34 dispersed
Cma03g01447 Cma-Chr3:9056189 Cma07g00062 Cma-Chr7:335438 9.46E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34720 PF02045 CBFB_NFYA 3.30E-24 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01447 K08064 - csv:101205549 308.145