Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01447 ATGCTCTTATTGGATTCTGAGCTTCCTCTGTTCGCTCTTCTTAAACTAAGAAATCAAGGCGAAGAAAGACGACGAAAAAACTACAACAAACACACAGTCTTCAGTTGCAGAAGAAGAAAAAACGAATTTGGGGATAATGGTGAGGCTGATGATCAGCAAAAGTACTCTGATTCTCACAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCATCATCACAACCCCAAATCAGTATGTAGCACCTCCTCAAGTTGGAGCTGGACATTCTATGGCACCCCCTGCTTATCCATTTCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGACTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTACGACGTCGACAATCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGTTTTTAACTGCGTTGCTTCAATATGTTGTGCAGCCCTACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGTCGGTTTCTCAAATCAAATAAGAATGAGAACCAACAAAAAGAAGTGGCATCAGGTGATAAAGAACTGACGTCTGAGGCATTGTTGGAGAATGGTGATCAGCGCATGTCAACAACCCTGCAACAGATTGGCACTGTACAGATTAAAGCTGATGTTGCTGAAACTTTACTGGGAAGCGTTTTAATGGAGCAAAGGAGATGGAGACGACGAGAGGTCAGGTCTGGGTTCTTATTGAATGTACAAAAAGAACACACATTCTTAGTGTTTGGTCTTGTTTTAGGAAGGAAAGGAGTTGATGCAATATACCCGTGA 945 42.33 MLLLDSELPLFALLKLRNQGEERRRKNYNKHTVFSCRRRKNEFGDNGEADDQQKYSDSHNHSSSVINGLNQPIITTPNQYVAPPQVGAGHSMAPPAYPFPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKFLTALLQYVVQPYLHESRHLHALRRARGCGGRFLKSNKNENQQKEVASGDKELTSEALLENGDQRMSTTLQQIGTVQIKADVAETLLGSVLMEQRRWRRREVRSGFLLNVQKEHTFLVFGLVLGRKGVDAIYP 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9056189 9064562 - CmaCh03G014470.1 Cma03g01447 291018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01447 314 SMART cbf3 145 217 IPR001289 GO:0003700|GO:0006355
Cma03g01447 314 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 148 214 IPR001289 GO:0003700|GO:0006355
Cma03g01447 314 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 42 236 - -
Cma03g01447 314 ProSiteProfiles NF-YA/HAP2 family profile. 146 217 IPR001289 GO:0003700|GO:0006355
Cma03g01447 314 MobiDBLite consensus disorder prediction 41 57 - -
Cma03g01447 314 ProSitePatterns NF-YA/HAP2 subunit signature. 151 171 IPR018362 GO:0003677|GO:0016602
Cma03g01447 314 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 42 236 IPR001289 GO:0003700|GO:0006355
Cma03g01447 314 MobiDBLite consensus disorder prediction 41 63 - -
Cma03g01447 314 Gene3D - 146 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01447 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 308.145
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01253 Cma-Chr2:7361987 Cma03g01447 Cma-Chr3:9056189 3.16E-32 dispersed
Cma03g01447 Cma-Chr3:9056189 Cma05g01413 Cma-Chr5:10511813 5.13E-34 dispersed
Cma03g01447 Cma-Chr3:9056189 Cma07g00062 Cma-Chr7:335438 9.46E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma20g00089 CCT,CST,ECH 1 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.7 2.1e-55 213.4
Cma02g01253 . 139 392 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 1.7e-54 210.3
Cma10g00928 CCT,ECH 23 237 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 3.2e-48 189.5
Cma02g01253 . 228 462 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 1.9e-49 193.7
Cma20g00089 CCT,CST,ECH 105 343 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.2 6.7e-47 185.3
Cma11g00848 CCT,CST,ECH 1 244 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.0 3.3e-46 183.0
Cma10g00928 CCT,ECH 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 6.2e-45 178.7
Cma07g00062 . 58 260 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.7 8.5e-48 187.6
Cma03g01447 . 42 221 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.4 5.3e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34720 PF02045 CBFB_NFYA 3.30E-24 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01447 Cma_Chr03 FPKM 11.330159 12.613457 22.876944 21.667257 7.538715 7.252256 6.506487 23.275906 27.066763 24.75519