Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01448 ATGGCCCATTCCACATTTTCTCAGGTGGCTGTCGCTGTTCCAGTTGGAAATGATTTGTCTGTCAAGAGATCAGTGTTTAAGACAAATAGCCTAAGATTCCATGATAAATCATGGTCACCTGTCTCAGCTCTGAACTTGAATCTAAGGGGCACTCGAGCAAGAGGTTGGCAAACAGTATGCATGTCCGTGCCACAAACAAGTGCACCGAAGGTATCTGTTGCACCTTTAGACCTTGAAGATGCCAAAGAGCCTCCATTGAATATATACAAACCAAAATCACCTTACACTGCAACTATCGTTTCGGTTGAAAGACTCGTTGGTCCAAAAGCACCGGGAGAGACTTGTCATATTGTAATTGATCATGGCGGCAATGTTCCCTATTGGGAAGGTCAGAGTTATGGTGTTATTCCTCCTGGTGAAAACCCGAAGAAACCTGGGAATCCACACAATGTTCGCCTTTACTCAATTGCATCAACTAGGTATGGAGATTCTTTTGATGGCAAGACAGCTAGTTTATGTGTTCGTCGTGCTGTTTATTATGACCCTGAAACTGGAAAGGAGGATCCTTTAAAGAATGGAGTATGCAGCAACTTCTTATGCGACTCGAAGCCCGGAGATAAAGTTCAGATCACAGGTCCATCTGGCAAGATAATGCTTCTTCCTGAAGACGACCCAAATGCCACCCACATAATGATCGCTACTGGCACTGGCGTTGCTCCATTCAGAGGTTATCTCCGACGAATGTTCATGGAGTCTGTACCGACATTCAAATTCGGTGGACTTGCTTGGCTGTTTCTCGGAGTGGCAAACGTCGATAGTCTTTTATACGACGATGAATTCAGCAAGTATCTGAAGGACTATCCTGAAAACTTCCGCTACGATCGAGCTCTTAGTAGGGAGCAAAAGAACAAGAGTGGAGGGAAAATGTACGTCCAGGACAAAATTGAGGAGTACAGCGACGAAATCTTTAAACTCCTGGACGGCGGGGCTCACATATACTTCTGTGGACTGAAGGGGATGATGCCTGGAATTCAGGACACTCTGAAGAAGGTTGCCGAGCAAAGAGGTGAGAAATGGGAAGAGAAGCTTTCACAACTTAAAAAGAACAAACAGTGGCATGTTGAAGCGGCTCTGATTGGCAAAAGAAGGCTAAGGGACCTATTGCTCCTAAAGGATAATCGCTTCTGTGCGGATTGTCGCGCTTCAGACCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGCGGCGTTCACAGAAGCCTTGGTGCACATATATCAAAGGTGTTATCAGTGACATTGGATGAATGGAATGATGATGAAATTGATGCTATGATAGAAATTGGAGGAAATTCTTCTGCAAATGCAATTTATGAAGCCTTTATTCCTGATGGATTTTCAAAACCTGGACCAGATGCCAGCCATGAACAACGTTCAAGATTTATTCGATCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTCATCAGCCCACTCTGACAAAAGCAATATCCAAGCAAACTTTGCTACAAGGGTCATGAACAGTTTTCGTTCTTCACAAAAACAAGAAGGTATGGTAGACTTTATTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGATATGATGACAAGCGATCCTTATGTAGTCTTGACTCTTGGACGACAGACTGTCCAGACATGTGTAGTCGCGAGCAACTTGAACCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAATCTTTTGGATCCTTAAAGTTGCAAGTATACGATTATGACACGTTTTCAGCAGACGACATAATGGGAGAAGCAGACATTGATCTCCAGCCCTTGATAACATCCGCAATGGCATTTGGAGATGCTGGATTGTTTTCAAATATGCAAATTGGAAAATGGCTGAAATCGCACGATAATGCTCTCATGAACGATAGCACCGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATGACACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTGGAATGGATGGCCTCTTGA 2079 43.34 MAHSTFSQVAVAVPVGNDLSVKRSVFKTNSLRFHDKSWSPVSALNLNLRGTRARGWQTVCMSVPQTSAPKVSVAPLDLEDAKEPPLNIYKPKSPYTATIVSVERLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPETGKEDPLKNGVCSNFLCDSKPGDKVQITGPSGKIMLLPEDDPNATHIMIATGTGVAPFRGYLRRMFMESVPTFKFGGLAWLFLGVANVDSLLYDDEFSKYLKDYPENFRYDRALSREQKNKSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGIQDTLKKVAEQRGEKWEEKLSQLKKNKQWHVEAALIGKRRLRDLLLLKDNRFCADCRASDPKWASANIGVFICLKCCGVHRSLGAHISKVLSVTLDEWNDDEIDAMIEIGGNSSANAIYEAFIPDGFSKPGPDASHEQRSRFIRSKYELQEFLKPSLRISSAHSDKSNIQANFATRVMNSFRSSQKQEGMVDFIGLLKVKVIKGTNLAIRDMMTSDPYVVLTLGRQTVQTCVVASNLNPVWNEELTLSVPQSFGSLKLQVYDYDTFSADDIMGEADIDLQPLITSAMAFGDAGLFSNMQIGKWLKSHDNALMNDSTVNIVDGKVKQEMTLKLQNVESGELDLELEWMAS 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9065506 9074155 + CmaCh03G014480.1 Cma03g01448 291019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01448 692 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 535 631 IPR035892 -
Cma03g01448 692 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 92 220 IPR017927 GO:0016491
Cma03g01448 692 PANTHER - 1 375 IPR015701 GO:0016491
Cma03g01448 692 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 272 283 IPR001709 GO:0016491
Cma03g01448 692 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 152 159 IPR001709 GO:0016491
Cma03g01448 692 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 260 269 IPR001709 GO:0016491
Cma03g01448 692 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 308 324 IPR001709 GO:0016491
Cma03g01448 692 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 127 137 IPR001709 GO:0016491
Cma03g01448 692 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 331 339 IPR001709 GO:0016491
Cma03g01448 692 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 193 202 IPR001709 GO:0016491
Cma03g01448 692 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 230 249 IPR001709 GO:0016491
Cma03g01448 692 SMART arf_gap_3 381 503 IPR001164 GO:0005096
Cma03g01448 692 ProSiteProfiles ARF GTPase-activating proteins domain profile. 381 509 IPR001164 GO:0005096
Cma03g01448 692 SUPERFAMILY Riboflavin synthase domain-like 82 223 IPR017938 -
Cma03g01448 692 Pfam Oxidoreductase NAD-binding domain 231 345 IPR001433 GO:0016491
Cma03g01448 692 CDD ArfGap 393 490 - -
Cma03g01448 692 PIRSF Frd-NADP+_RD 4 377 IPR015701 GO:0016491
Cma03g01448 692 SUPERFAMILY ArfGap/RecO-like zinc finger 381 498 IPR037278 -
Cma03g01448 692 CDD CYPOR_like_FNR 87 375 - -
Cma03g01448 692 Gene3D Arf GTPase activating protein 376 507 IPR038508 -
Cma03g01448 692 Pfam C2 domain 539 628 IPR000008 -
Cma03g01448 692 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 224 375 IPR039261 -
Cma03g01448 692 PIRSF FNR-PetH 2 377 IPR035442 GO:0016491
Cma03g01448 692 Pfam Putative GTPase activating protein for Arf 382 497 IPR001164 GO:0005096
Cma03g01448 692 SMART C2_3c 539 634 IPR000008 -
Cma03g01448 692 ProSiteProfiles C2 domain profile. 520 635 IPR000008 -
Cma03g01448 692 Coils Coil 349 369 - -
Cma03g01448 692 Gene3D C2 domain 536 691 IPR035892 -
Cma03g01448 692 PANTHER FERREDOXIN--NADP REDUCTASE, EMBRYO ISOZYME, CHLOROPLASTIC 1 375 - -
Cma03g01448 692 Gene3D Translation factors 76 214 - -
Cma03g01448 692 CDD C2_ArfGAP 537 681 - -
Cma03g01448 692 Gene3D - 215 375 IPR039261 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01448 Cma18g00511 CCT
Cma03g01448 Cma13g00493 CCT
Cma03g01448 Cma07g00060 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01448 Cma-Chr3:9065506 Cma04g01337 Cma-Chr4:6824795 7.49E-109 dispersed
Cma05g00686 Cma-Chr5:3568883 Cma03g01448 Cma-Chr3:9065506 1.67E-13 dispersed
Cma16g00225 Cma-Chr16:1029229 Cma03g01448 Cma-Chr3:9065506 5.36E-11 dispersed
Cma06g00578 Cma-Chr6:2783449 Cma03g01448 Cma-Chr3:9065506 2.98E-98 transposed
Cma13g00493 Cma-Chr13:5283276 Cma03g01448 Cma-Chr3:9065506 1.99E-163 wgd
Cma18g00511 Cma-Chr18:3056927 Cma03g01448 Cma-Chr3:9065506 4.69E-151 wgd
Cma03g01448 Cma-Chr3:9065506 Cma07g00060 Cma-Chr7:331093 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01448 K02641 - csv:101216935 731.095