Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01448 | ATGGCCCATTCCACATTTTCTCAGGTGGCTGTCGCTGTTCCAGTTGGAAATGATTTGTCTGTCAAGAGATCAGTGTTTAAGACAAATAGCCTAAGATTCCATGATAAATCATGGTCACCTGTCTCAGCTCTGAACTTGAATCTAAGGGGCACTCGAGCAAGAGGTTGGCAAACAGTATGCATGTCCGTGCCACAAACAAGTGCACCGAAGGTATCTGTTGCACCTTTAGACCTTGAAGATGCCAAAGAGCCTCCATTGAATATATACAAACCAAAATCACCTTACACTGCAACTATCGTTTCGGTTGAAAGACTCGTTGGTCCAAAAGCACCGGGAGAGACTTGTCATATTGTAATTGATCATGGCGGCAATGTTCCCTATTGGGAAGGTCAGAGTTATGGTGTTATTCCTCCTGGTGAAAACCCGAAGAAACCTGGGAATCCACACAATGTTCGCCTTTACTCAATTGCATCAACTAGGTATGGAGATTCTTTTGATGGCAAGACAGCTAGTTTATGTGTTCGTCGTGCTGTTTATTATGACCCTGAAACTGGAAAGGAGGATCCTTTAAAGAATGGAGTATGCAGCAACTTCTTATGCGACTCGAAGCCCGGAGATAAAGTTCAGATCACAGGTCCATCTGGCAAGATAATGCTTCTTCCTGAAGACGACCCAAATGCCACCCACATAATGATCGCTACTGGCACTGGCGTTGCTCCATTCAGAGGTTATCTCCGACGAATGTTCATGGAGTCTGTACCGACATTCAAATTCGGTGGACTTGCTTGGCTGTTTCTCGGAGTGGCAAACGTCGATAGTCTTTTATACGACGATGAATTCAGCAAGTATCTGAAGGACTATCCTGAAAACTTCCGCTACGATCGAGCTCTTAGTAGGGAGCAAAAGAACAAGAGTGGAGGGAAAATGTACGTCCAGGACAAAATTGAGGAGTACAGCGACGAAATCTTTAAACTCCTGGACGGCGGGGCTCACATATACTTCTGTGGACTGAAGGGGATGATGCCTGGAATTCAGGACACTCTGAAGAAGGTTGCCGAGCAAAGAGGTGAGAAATGGGAAGAGAAGCTTTCACAACTTAAAAAGAACAAACAGTGGCATGTTGAAGCGGCTCTGATTGGCAAAAGAAGGCTAAGGGACCTATTGCTCCTAAAGGATAATCGCTTCTGTGCGGATTGTCGCGCTTCAGACCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGCGGCGTTCACAGAAGCCTTGGTGCACATATATCAAAGGTGTTATCAGTGACATTGGATGAATGGAATGATGATGAAATTGATGCTATGATAGAAATTGGAGGAAATTCTTCTGCAAATGCAATTTATGAAGCCTTTATTCCTGATGGATTTTCAAAACCTGGACCAGATGCCAGCCATGAACAACGTTCAAGATTTATTCGATCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTCATCAGCCCACTCTGACAAAAGCAATATCCAAGCAAACTTTGCTACAAGGGTCATGAACAGTTTTCGTTCTTCACAAAAACAAGAAGGTATGGTAGACTTTATTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGATATGATGACAAGCGATCCTTATGTAGTCTTGACTCTTGGACGACAGACTGTCCAGACATGTGTAGTCGCGAGCAACTTGAACCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAATCTTTTGGATCCTTAAAGTTGCAAGTATACGATTATGACACGTTTTCAGCAGACGACATAATGGGAGAAGCAGACATTGATCTCCAGCCCTTGATAACATCCGCAATGGCATTTGGAGATGCTGGATTGTTTTCAAATATGCAAATTGGAAAATGGCTGAAATCGCACGATAATGCTCTCATGAACGATAGCACCGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATGACACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTGGAATGGATGGCCTCTTGA | 2079 | 43.34 | MAHSTFSQVAVAVPVGNDLSVKRSVFKTNSLRFHDKSWSPVSALNLNLRGTRARGWQTVCMSVPQTSAPKVSVAPLDLEDAKEPPLNIYKPKSPYTATIVSVERLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPETGKEDPLKNGVCSNFLCDSKPGDKVQITGPSGKIMLLPEDDPNATHIMIATGTGVAPFRGYLRRMFMESVPTFKFGGLAWLFLGVANVDSLLYDDEFSKYLKDYPENFRYDRALSREQKNKSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGIQDTLKKVAEQRGEKWEEKLSQLKKNKQWHVEAALIGKRRLRDLLLLKDNRFCADCRASDPKWASANIGVFICLKCCGVHRSLGAHISKVLSVTLDEWNDDEIDAMIEIGGNSSANAIYEAFIPDGFSKPGPDASHEQRSRFIRSKYELQEFLKPSLRISSAHSDKSNIQANFATRVMNSFRSSQKQEGMVDFIGLLKVKVIKGTNLAIRDMMTSDPYVVLTLGRQTVQTCVVASNLNPVWNEELTLSVPQSFGSLKLQVYDYDTFSADDIMGEADIDLQPLITSAMAFGDAGLFSNMQIGKWLKSHDNALMNDSTVNIVDGKVKQEMTLKLQNVESGELDLELEWMAS | 692 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9065506 | 9074155 | + | CmaCh03G014480.1 | Cma03g01448 | 291019 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01448 | 692 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 535 | 631 | IPR035892 | - | |
Cma03g01448 | 692 | ProSiteProfiles | Ferredoxin reductase-type FAD binding domain profile. | 92 | 220 | IPR017927 | GO:0016491 | |
Cma03g01448 | 692 | PANTHER | - | 1 | 375 | IPR015701 | GO:0016491 | |
Cma03g01448 | 692 | PRINTS | Flavoprotein pyridine nucleotide cytochrome reductase signature | 272 | 283 | IPR001709 | GO:0016491 | |
Cma03g01448 | 692 | PRINTS | Flavoprotein pyridine nucleotide cytochrome reductase signature | 152 | 159 | IPR001709 | GO:0016491 | |
Cma03g01448 | 692 | PRINTS | Flavoprotein pyridine nucleotide cytochrome reductase signature | 260 | 269 | IPR001709 | GO:0016491 | |
Cma03g01448 | 692 | PRINTS | Flavoprotein pyridine nucleotide cytochrome reductase signature | 308 | 324 | IPR001709 | GO:0016491 | |
Cma03g01448 | 692 | PRINTS | Flavoprotein pyridine nucleotide cytochrome reductase signature | 127 | 137 | IPR001709 | GO:0016491 | |
Cma03g01448 | 692 | PRINTS | Flavoprotein pyridine nucleotide cytochrome reductase signature | 331 | 339 | IPR001709 | GO:0016491 | |
Cma03g01448 | 692 | PRINTS | Flavoprotein pyridine nucleotide cytochrome reductase signature | 193 | 202 | IPR001709 | GO:0016491 | |
Cma03g01448 | 692 | PRINTS | Flavoprotein pyridine nucleotide cytochrome reductase signature | 230 | 249 | IPR001709 | GO:0016491 | |
Cma03g01448 | 692 | SMART | arf_gap_3 | 381 | 503 | IPR001164 | GO:0005096 | |
Cma03g01448 | 692 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 381 | 509 | IPR001164 | GO:0005096 | |
Cma03g01448 | 692 | SUPERFAMILY | Riboflavin synthase domain-like | 82 | 223 | IPR017938 | - | |
Cma03g01448 | 692 | Pfam | Oxidoreductase NAD-binding domain | 231 | 345 | IPR001433 | GO:0016491 | |
Cma03g01448 | 692 | CDD | ArfGap | 393 | 490 | - | - | |
Cma03g01448 | 692 | PIRSF | Frd-NADP+_RD | 4 | 377 | IPR015701 | GO:0016491 | |
Cma03g01448 | 692 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 381 | 498 | IPR037278 | - | |
Cma03g01448 | 692 | CDD | CYPOR_like_FNR | 87 | 375 | - | - | |
Cma03g01448 | 692 | Gene3D | Arf GTPase activating protein | 376 | 507 | IPR038508 | - | |
Cma03g01448 | 692 | Pfam | C2 domain | 539 | 628 | IPR000008 | - | |
Cma03g01448 | 692 | SUPERFAMILY | Ferredoxin reductase-like, C-terminal NADP-linked domain | 224 | 375 | IPR039261 | - | |
Cma03g01448 | 692 | PIRSF | FNR-PetH | 2 | 377 | IPR035442 | GO:0016491 | |
Cma03g01448 | 692 | Pfam | Putative GTPase activating protein for Arf | 382 | 497 | IPR001164 | GO:0005096 | |
Cma03g01448 | 692 | SMART | C2_3c | 539 | 634 | IPR000008 | - | |
Cma03g01448 | 692 | ProSiteProfiles | C2 domain profile. | 520 | 635 | IPR000008 | - | |
Cma03g01448 | 692 | Coils | Coil | 349 | 369 | - | - | |
Cma03g01448 | 692 | Gene3D | C2 domain | 536 | 691 | IPR035892 | - | |
Cma03g01448 | 692 | PANTHER | FERREDOXIN--NADP REDUCTASE, EMBRYO ISOZYME, CHLOROPLASTIC | 1 | 375 | - | - | |
Cma03g01448 | 692 | Gene3D | Translation factors | 76 | 214 | - | - | |
Cma03g01448 | 692 | CDD | C2_ArfGAP | 537 | 681 | - | - | |
Cma03g01448 | 692 | Gene3D | - | 215 | 375 | IPR039261 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01448 | Cma18g00511 | CCT | |
Cma03g01448 | Cma13g00493 | CCT | |
Cma03g01448 | Cma07g00060 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01448 | Cma-Chr3:9065506 | Cma04g01337 | Cma-Chr4:6824795 | 7.49E-109 | dispersed | |
Cma05g00686 | Cma-Chr5:3568883 | Cma03g01448 | Cma-Chr3:9065506 | 1.67E-13 | dispersed | |
Cma16g00225 | Cma-Chr16:1029229 | Cma03g01448 | Cma-Chr3:9065506 | 5.36E-11 | dispersed | |
Cma06g00578 | Cma-Chr6:2783449 | Cma03g01448 | Cma-Chr3:9065506 | 2.98E-98 | transposed | |
Cma13g00493 | Cma-Chr13:5283276 | Cma03g01448 | Cma-Chr3:9065506 | 1.99E-163 | wgd | |
Cma18g00511 | Cma-Chr18:3056927 | Cma03g01448 | Cma-Chr3:9065506 | 4.69E-151 | wgd | |
Cma03g01448 | Cma-Chr3:9065506 | Cma07g00060 | Cma-Chr7:331093 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01448 | K02641 | - | csv:101216935 | 731.095 |