Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01452 ATGGAATGGAGCCCCATCTCTGGCAACCCAAAACCTGCCTCCTCCATACCAAGACATAACGCCATAAAAGCTTATAAGACCAGATTTCGTTTATTGGGGAAGATGGGGAAGTTTCAAATCCGGAAATTCTTGGTTCCTCTACTACTTCTGATAATTTCTGAGTATCTACTAACTGGAGACGCCAAAACCAATTCTCTTTTCATCAACTGTGGCTCAAGCTCAAACGAAACTGCTGATGGGCGGAAATGGATTGGCGACCTGACTTCCGAAGTGAACTTTTCCGTGGGTAATCTTGGTGCTAATGTCAATGCCTCCACTGACACTTTAAACGGCGATTCAGTCTTTGAGCCGCTGTACAAAACTGCTCGGATATTTACTAATTCCCTGAACTATACTTTTAAAGGCGTTTGGGGTAATCATATTGTTCGCCTCCATTTCTGCCCCTTTCCTTTTGAGAACTTCAATGTGAACGAGTCATCATTTTCTGTCTCAGCAAATGGTCTTAGACTGGTTTCAGAGTTCAGCGTTCCCAATGAGATTGCATATAAGAATATGGAGTTTCAGCGTTCTGGGGTCAATTCAAGTTCATTCTCTTTGATTAAAGAGTTCATTATTTCTGTCAATTCAGAAGCATTTGTTCTTGAGTTCTCTCCTTCTGGAGGATCATTTGGGTTCATTAATGCTATTGAAATCGTCCCCCTGGTGAATGAGCTTTTTGCAGGTTCGATTGATAAGGTGGGTGGAAGTGCTGTTAGTTTGAATGTGAGTGAAAGGGGAGCTGAAACTATGTACAGATTGAATGTTGGAGGTTCGGTGATCAAGCCCACTCAAGATTCAAATCTTTGGAGAATGTGGGAAGTGGACTCGAGTTATATGATTACAGCAGATGCTGGGTCGGAGATACATAACAGTTCTAATGTAACGTATGCTTCCATGAATGACTCTATTGTAGCTCCTCTCCCTGTGTATGAAACAGCCAGAACGATGTCCGAGACAGAAGTGCTCGAGAAAAGATTCAACATGTCGTGGAAATTTGAAGTTCATCCTGGTTTCGAATATTTGATTAGATTACATTTCTGTGAGCTGCTGTATGACAAGGCAAGAGAGAGGGTTTTCAAGATTTACATAAACAATCGAACTGCAGTTGAGAGTTTTGATGTGTTTGTACGAGCGGGGGGGATGAACAGAGCATATCATGTGGATTTTCTTGAACCAATATCATCCAAAATCAACACCCTTTGGATTCAACTAGGCCCTGATACGGCTGCAGGTGCTGCCGGAACAGATGCTCTCTTGAATGGTCTGGAAATATTTAAGCTGAGTCAAAATGGGAATCTTGCGTTCATTGACAGGTTTAATGCCTTGGAACAGTCCATGGGAAACTCGAAATCTCAAATTCTTTGGATAGGCATTGGAGCAGGTTTGGCATCTGTTGTTTTCCTTGCTGTTATTGTCTTTCTCACCATCTATTTCTGCAGAAACCGGAGGAGGAATTTTACTAAGAAGAACTCTTCTAAGTGGAGAGCAGGATCCAGTCATGGGGCCACTGTCACCAGCACCTTGGGGGGAGGCCAAAGTGTATTTGGGACCTTGCCATCTACCAGAGTTGGCAAATGGTTTACATTAGCAGAGATTCTTGCAGCAACAGATAACTTTGATGAAGCTCTGATGATCGGAGTTGGCGGTTTTGGTAAGGTCTACAGAGGGGAGATTGATGATGGTACTCTTGTGGCAATCAAGAGAGCAAACCCGCAGTCTCAGCAGGGACTTGCCGAGTTCGAGACTGAAATTGAAATGCTTTCTAAACTTAGGCATAGGCATCTGGTCTCCATGATCGGCTTTTGCGACGAGCAAAAGGAAATGATCTTGGTTTACGAATACATGGCGAATGGCACTCTAAGAAGCCATCTCTTTGGGAGTGATCTCCCACCTTTGACATGGAAGCAGCGATTGGAAGTGTGCATTGGTGCAGCCAGGGGACTCCATTACCTTCACACAGGAGCTGAGAGAGGAATAATCCACAGAGATGTGAAGACAACCAACATACTCTTGGATGAGAACTTTGTTGCAAAAATGTCTGATTTTGGTCTTTCAAAAACAGGTCCTGCTTTGGATCATACCCATGTTAGTACTGCAGTTAAGGGCAGCTTTGGCTACCTCGATCCAGAGTATTTCAGGCGCCAGCAGTTGAGTGAAAAATCTGATGTCTATTCTTTTGGTGTGGTATTGTTAGAAGTTGTTTGTGCACGAGCTGTTATAAACCCAACTTTGCCCAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAGCGCAAAAAGTTGCTGCACACCATCATAGACTCACATCTCAAAGACAAGTATTGCCCTGAGTCTCTTAAAACATTTGGAGAGATAGCAGAAAAATGCCTTGCTGATGAAGGGAAGATTCGTCCAACAATGGGGGAAGTTCTATGGCACCTAGAATTTGCTCTGCAACTCCATGATGCTTGGATCCGCACCAATGATGCTCAAAGTTCTTGCACAGTAAACTCAGAAGGAGCCCAAGCTGAGGAACAGAGGGTAGAAGTTGATCGGGAAGAGGAAAGCTCCAGCTTGAAAGCTTAA 2610 43.64 MEWSPISGNPKPASSIPRHNAIKAYKTRFRLLGKMGKFQIRKFLVPLLLLIISEYLLTGDAKTNSLFINCGSSSNETADGRKWIGDLTSEVNFSVGNLGANVNASTDTLNGDSVFEPLYKTARIFTNSLNYTFKGVWGNHIVRLHFCPFPFENFNVNESSFSVSANGLRLVSEFSVPNEIAYKNMEFQRSGVNSSSFSLIKEFIISVNSEAFVLEFSPSGGSFGFINAIEIVPLVNELFAGSIDKVGGSAVSLNVSERGAETMYRLNVGGSVIKPTQDSNLWRMWEVDSSYMITADAGSEIHNSSNVTYASMNDSIVAPLPVYETARTMSETEVLEKRFNMSWKFEVHPGFEYLIRLHFCELLYDKARERVFKIYINNRTAVESFDVFVRAGGMNRAYHVDFLEPISSKINTLWIQLGPDTAAGAAGTDALLNGLEIFKLSQNGNLAFIDRFNALEQSMGNSKSQILWIGIGAGLASVVFLAVIVFLTIYFCRNRRRNFTKKNSSKWRAGSSHGATVTSTLGGGQSVFGTLPSTRVGKWFTLAEILAATDNFDEALMIGVGGFGKVYRGEIDDGTLVAIKRANPQSQQGLAEFETEIEMLSKLRHRHLVSMIGFCDEQKEMILVYEYMANGTLRSHLFGSDLPPLTWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPTLPKDQINLAEWAMKWQRKKLLHTIIDSHLKDKYCPESLKTFGEIAEKCLADEGKIRPTMGEVLWHLEFALQLHDAWIRTNDAQSSCTVNSEGAQAEEQRVEVDREEESSSLKA 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9096111 9099281 + CmaCh03G014520.1 Cma03g01452 291023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01452 869 Pfam Malectin-like domain 68 439 IPR024788 -
Cma03g01452 869 MobiDBLite consensus disorder prediction 843 869 - -
Cma03g01452 869 Pfam Protein tyrosine and serine/threonine kinase 557 819 IPR001245 GO:0004672|GO:0006468
Cma03g01452 869 MobiDBLite consensus disorder prediction 852 869 - -
Cma03g01452 869 ProSiteProfiles Protein kinase domain profile. 552 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01452 869 PANTHER OSJNBA0058K23.13 PROTEIN 55 862 - -
Cma03g01452 869 CDD STKc_IRAK 558 823 - -
Cma03g01452 869 Gene3D Transferase(Phosphotransferase) domain 1 628 847 - -
Cma03g01452 869 SUPERFAMILY Protein kinase-like (PK-like) 531 825 IPR011009 -
Cma03g01452 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672|GO:0006468
Cma03g01452 869 SMART serkin_6 552 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01452 869 ProSitePatterns Protein kinases ATP-binding region signature. 558 580 IPR017441 GO:0005524
Cma03g01452 869 PANTHER OS07G0166700 PROTEIN 55 862 IPR045272 GO:0004714|GO:0006468
Cma03g01452 869 Gene3D Phosphorylase Kinase; domain 1 529 627 - -
Cma03g01452 869 Gene3D - 258 442 - -
Cma03g01452 869 Gene3D - 61 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01452 Cma-Chr3:9096111 Cma09g00890 Cma-Chr9:4385407 0 dispersed
Cma14g01162 Cma-Chr14:9201561 Cma03g01452 Cma-Chr3:9096111 0 dispersed
Cma16g00354 Cma-Chr16:1676594 Cma03g01452 Cma-Chr3:9096111 1.01E-75 dispersed
Cma03g01452 Cma-Chr3:9096111 Cma01g01189 Cma-Chr1:8611981 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68448 PF12819 Malectin_like 7.70E-32 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01452 - - bhj:120073088 1541.94