Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01465 ATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCAATATAAAGAAAAGAAGGAGAGTGTAAGTGAGAATGAGGTTCAAGATGTACCTTCAAGTGCGACAAAACAGAAAGTGGAGGTTGCCAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCCGATGCTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACCGAGTACATGCGTCTTCGTAGACATAAAATGGGTGTTGATGATTTTGAACTTTTGACAATTATAGGAAGGGGGGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAGGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAGTCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTCAAAGCTGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGAGGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACTCTGTTAATGCGCAAGGACATTTTGACGGAGGATGAGGCTAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTACATTCACAGAGATATCAAGCCGGATAATTTACTGCTTGATCGTTATGGGCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACCGAGCAAGAAAATATAGTGGGGCAGAATGTCAGATCTTCTGATAGTCAAATTAGTGTACCAAAGCGAACACAACAAGAGCAATTATTACATTGGCAAAAGAACAGACGAACATTGGCTTATTCTGCTGTTGGAACGCCGGACTATATTGCCCCAGAAGTGTTATTGAGGAAAGGATATGGAATTGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTCGTGGGATTTCCACCTTTCTATTCTGATGATCCAATGTCTACTTGTAGAAAGATCATTAACTGGAGAACTCATTTGAGATTCCCAAAAGAAGCAAAACTTTCCATTGAGGCCAAAGATCTTATTTGCAAACTTTTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGAGCTATAGAAATTAAGGCGCATCCATGGTTTAAAGGGATACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATCCCAGAGATCCATGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGAAGCTTTCACCCAAGGATGTAAACTTTGTTGGCTATACGTACAAGAATTTTGAAATTGTCAACGAACACCACTTGTCTGGCATTACTGAGACGAGGAAAAAGCTTAACAAGACCAAGAGACCATCTCCACAGAAGATTCTTCAGAGCAGCCTGTTCAAAGAAGTTTTCCTAATCATTTGCCAACCCATCTCGAAGTCTCGGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAGCAGCAGAAGCGATGGGGGAAATGAAAGGTGGCTTTGGATGGAGAATTTCGAAGGCGATTTGAGTGATATTGTGAGAGGAGGAGGAAGAAGTAGTTGTAGTTGTTATGGATGCAAATCAGAAGACGTTGACCACCAACCCTTTTGCCCATCAGAACAATCTTGGAAATTTTCATCTAAAGTGTTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATGAATTCAGTTTCGGGGATCCCTTTTGTGGTGCAGCCATCAGAGATCCACTTGTTGAGGACAGAGGAAGTGTGTTTGGTGTGGATGAAGATGATGAGCTTATCAAAACACCCTCCAACGTATTCTCACGCATGCTTCACATCTCTCCACCGACACCAACACTTACTTCTTCCCCTTCTAATTTCCTAATTCCTTCTCCCCTTCACATCTCTTCTCCTACCAAGCCATGGAAGAGGCAAGCAAGGAAGGTGGTGTGTGTTCCTGCTCCAGTGGGTGGCGGCAGCGGCAGCAGCAGCTGCAGCAGGCCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCCTATCCTAGGGGGTACTACAGATGCAGCAGCTCAAAGGGTTGTTCAGCCAGAAAGCAAGTGGAGAGAAGTAGAACAGATCCCAACATGCTGGTGATTACTTACACATCCGAGCACAACCATCCATGGCCAACTCAGAGAAACGCTCTAGCAGGCTCGTCAAGGTCCCAACACTCCAAACACAATTCTTCTTCAAAGCCCTCTCCCGCTACGCCTCAAAACCCAACAACAACAACAACAACAATTCAAGATCACAAGGAAGATCAAACCAAGAATGAAGCAACAAGATCATCGCCATCATCATCAAATAACAAGGTTAAGGAAGAAGTTGTTGAGGAGATTGAGAAACAGTTTGAAACAGAAGAGCATCATGAATTGAGCGAAGGGTTTCAATATAGGGTGCCTGCAATGGGAAGCAATACCACCAACAACAATCAAAGTGATGATTTTTTTGCAGATTTGGAAGAATTAGACACCCACTCTTTAACCCTCTTCTTCACTCAACCCCACAAATCAGAGCAATGCAAAGGGGGCGGTGGGTTAGACGACGTCGTTGCATTCAATCCTCCCTTTGATTGGCCACCACCTCAAAACAACAACAATTCACAACTTCCATGA 2769 43.01 MDSARSWFQKFQYKEKKESVSENEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADASEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDEDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEQENIVGQNVRSSDSQISVPKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGIECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPKEAKLSIEAKDLICKLLCNVEQRIGTKGAIEIKAHPWFKGIQWDKLYQMEAVIIPEIHDELDTRNFEKYEEKLSPKDVNFVGYTYKNFEIVNEHHLSGITETRKKLNKTKRPSPQKILQSSLFKEVFLIICQPISKSRKAPIHHLVQLDHCNSSRSDGGNERWLWMENFEGDLSDIVRGGGRSSCSCYGCKSEDVDHQPFCPSEQSWKFSSKVLEEEEEEEEEEDEFSFGDPFCGAAIRDPLVEDRGSVFGVDEDDELIKTPSNVFSRMLHISPPTPTLTSSPSNFLIPSPLHISSPTKPWKRQARKVVCVPAPVGGGSGSSSCSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQHSKHNSSSKPSPATPQNPTTTTTTIQDHKEDQTKNEATRSSPSSSNNKVKEEVVEEIEKQFETEEHHELSEGFQYRVPAMGSNTTNNNQSDDFFADLEELDTHSLTLFFTQPHKSEQCKGGGGLDDVVAFNPPFDWPPPQNNNNSQLP 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9131488 9140753 - CmaCh03G014650.1 Cma03g01465 291036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01465 922 ProSiteProfiles Protein kinase domain profile. 106 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01465 922 Pfam WRKY DNA -binding domain 702 759 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g01465 922 SUPERFAMILY WRKY DNA-binding domain 698 761 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma03g01465 922 SMART pkinase_C_6 406 454 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma03g01465 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Cma03g01465 922 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 28 506 - -
Cma03g01465 922 SMART WRKY_cls 700 760 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g01465 922 Gene3D Transferase(Phosphotransferase) domain 1 296 425 - -
Cma03g01465 922 Gene3D Transferase(Phosphotransferase) domain 1 190 257 - -
Cma03g01465 922 SMART serkin_6 106 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01465 922 Gene3D WRKY domain 686 762 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma03g01465 922 SUPERFAMILY Protein kinase-like (PK-like) 87 446 IPR011009 -
Cma03g01465 922 CDD STKc_NDR_like 104 453 - -
Cma03g01465 922 MobiDBLite consensus disorder prediction 823 844 - -
Cma03g01465 922 Gene3D Phosphorylase Kinase; domain 1 78 189 - -
Cma03g01465 922 MobiDBLite consensus disorder prediction 753 844 - -
Cma03g01465 922 ProSiteProfiles AGC-kinase C-terminal domain profile. 406 462 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma03g01465 922 MobiDBLite consensus disorder prediction 892 922 - -
Cma03g01465 922 Pfam Protein kinase domain 107 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01465 922 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Cma03g01465 922 MobiDBLite consensus disorder prediction 726 745 - -
Cma03g01465 922 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 506 - -
Cma03g01465 922 MobiDBLite consensus disorder prediction 753 800 - -
Cma03g01465 922 ProSiteProfiles WRKY domain profile. 695 761 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01465 Cma-Chr3:9131488 Cma08g01079 Cma-Chr8:6729107 0 dispersed
Cma18g00530 Cma-Chr18:3291663 Cma03g01465 Cma-Chr3:9131488 1.06E-58 wgd
Cma03g01465 Cma-Chr3:9131488 Cma07g00047 Cma-Chr7:284916 1.17E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34722 PF00069 Pkinase 2.60E-63 CL0016 Cma TF
68449 PF00069 Pkinase 2.60E-63 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01465 K08790 - csv:101208438 902.894