Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01479 ATGGGGAAGAAGAAGAAGAGGGTTTCGTCTAAGGTATGGTGCTATTATTGCGACAGAGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCCAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTTCACAAGGAGTCGGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAATCGACAGATATTGAAATATATGGAATGCAAGGAATTCCTCCCGATGTCTTGGCAGCACACTATGGCGAGGACGAAGAAGAGTCCTTATCAAAGGTGGCCAAAGTGGAGATGCCACCGACTCAGATGGTTGGAGGTGTGGTGCCCGGATCGCTGGGCATTGTATACCCTCCTCAGCCAGGTTTAGCTGCAATTCAACCTATTTATCCTTCGACTGGACAAGCACAGCCTACTGCCTGGCCGGTCCCACCTCGTCCCCAACCTTGGCTCCCTCCAAATTCAGCCGTTTCAATTTCGGCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCCCCACTTCCAGTATCATCAACTCCTATGCTCCAGTCTTCACAAATAACACATCCTGGATTGACTTCAACCACTCCTTCAGTTTCTGTATCTCAGCCGTTGTTCCCTGTTGTTAATAATAGCCACGGTCCTACTCAAAGCTCTCCTTTTCCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCAGCAGCTGATATCAAGGGCTCAGTGACACATCTGGGCACTAACTCCTTTTCTACTATCAGCAATCAGGTTTCAAATGTTCCAGGTGGAATATTAAGCAATTCACACTCCTATGCCTCGGGACCAAATACGGGTGGTCCTTCTATCGGACCACCTCCTGTAATTGCAAATAAGGCTCCTACTCAGCCATCAGCAAACGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACCAAGTATCAGGTGCACGATGAAACTAGCCAGATGAGTTCAATTGATGCAGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCACATTTTAATTGA 1128 47.52 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEDEEESLSKVAKVEMPPTQMVGGVVPGSLGIVYPPQPGLAAIQPIYPSTGQAQPTAWPVPPRPQPWLPPNSAVSISAPAPLGYAQQPLFPVQTARPPLPVSSTPMLQSSQITHPGLTSTTPSVSVSQPLFPVVNNSHGPTQSSPFPSSTLSTSIPLTSAADIKGSVTHLGTNSFSTISNQVSNVPGGILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSANEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPHFN 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9223188 9228989 - CmaCh03G014790.1 Cma03g01479 291050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01479 375 Gene3D Classic Zinc Finger 1 66 - -
Cma03g01479 375 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Cma03g01479 375 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cma03g01479 375 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 371 - -
Cma03g01479 375 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cma03g01479 375 PANTHER ZINC FINGER PROTEIN 207 1 371 - -
Cma03g01479 375 SMART c2h2final6 36 59 IPR013087 -
Cma03g01479 375 SMART c2h2final6 12 35 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01479 Cma-Chr3:9223188 Cma07g00032 Cma-Chr7:200514 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34724 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01479 - - csv:101206973 666.766