Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01484 ATGGCGCCGGGTCTCAGAGACCTCCAGCTCGCCCAGGTCGCCGCCGCAGACCCTCGCCTGCCGGATATTTCTTCTGCTGCTGCTGAACTTTCCGATGATCTTGAGGATGTGCGTTTGCTTGATTCCTACGAGAAGCAGGAGGAGAATTTGGGCGAAATTGAGGAAGGTATGAGGAGGGTTCAGGTCTCAGTTTCTGGGATGACCTGCGCTGCTTGTTCTAATTCCGTGGAGGCTGCTTTGAGGGGCGTTAATGGCGTTTTGACGGCTTCCGTTGCATTGCTTCAGAACAGAGCTGACGTGGTTTTTGACTCCAGCTTGGTTAAGGAAGAAGATATCAAAGAAGCAATAGAAGATGCTGGATTTGAGGCTGAGATTATACCTGAAGCTCCTTCAGTTGGAAAGAAGTCGCATGGAGCACTGGTGGGTCAATTTACCATCGGTGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAGACCATTTTAAGAGATCTTCCTGGTGTTAGAAGAGCAGTAGTTGCTTTGGCCACATCATTGGGAGAAGTTGAATATGATCCTACAATTACCAGTAAAGACGACATAGTTAATGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGTGAGCAAGATAAACTTTTACTAGCGGTTGCAGGCATTGCTGGCGAGGTTGATGTACAGTTTTTGGAAGTCATACTTAGCAACTTGAAAGGGGTGCGGCGGTTTCTCTTTGACAGTACATCAGGAACACTTGAGGTTATTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAACTGCATGTTACCAGCCCTTACACAAGGTTAACGTCTAAAGATGTTGAAGAAGCTACGAACATGTTTTGGCTCTTTATCCCCAGTCTGTTTCTCAGTGTACTGATCTTTCTTCAACAAGTAATATGTCCTCATATTCCTTTAATCTACTCATTGTTACTCTGGCGCTGTGGACCCTTTCTTATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTCATCATTGGAAAGCGCTTTTATGTTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAGCTAACATGGATGTCTTGGTTGCTTTGGGTACCACGGCCTCTTATGTCTATTCTGTTTGTGCACTTCTCTATGGTGCAGTCACCGGATTTTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTGATAACCTTTGTATTATTGGGAAAGTACTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTTTATTGCTCATCCGGGATAAAGGTGGGAATTTGATAGAAGAAAGGGAAATAGATGCTCTGTTAATTCAACCTGGCGACATGTTGAAAGTTCTTCCTGGTACAAAGATTCCAGCGGATGGTGTTGTTAATTGGGGTTCAAGTTATGTTAATGAGAGTATGGTTACTGGAGAATCTGTACCTGTTTTGAAGGAGGTTAACTCCCATGTTATTGGGGGTACAATTAATTTTCATGGAGCTCTTCACATCCAAGCAACGAAAGTAGGATCTGATACAGTTTTGAATCAGATTATTAGTTTGGTTGAGACAGCTCAGATGTCTAAAGCCCCAATCCAGAAGTTTGCTGATTTTGTAGCAAGTATATTCGTTCCTACCGTTGTTGCTATAGCATTTTGTACGTTATTTGGTTGGTATGTTGGAGGAATTCTTGGGGCTTATCCAGCTGAATGGCTCCCAGAAAATGGAAATTACTTCGTATTTTCCCTCATGTTTGCAATAGCAGTGGTAGTTATTGCATGTCCTTGTGCACTAGGCTTGGCCACGCCGACTGCTGTCATGGTTGCTACAGGGGTTGGTGCCAGCAATGGTGTCTTGATCAAAGGAGGAGACGCTTTGGAGAGGGCCCAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAGAGCCACCGTCACTACTGCCAAAGTATTCACTGAAATTTCTCGAGGAGATTTTCTTAAGCTGGTTGCTTCAGCAGAGGCTAGCAGCGAACACCCTTTGGGAAAAGCTATAGTCGAGTATGCACGACATTTCCATTTCTTCGACGATCCTTCTGCAACAAAAAATGGGGAAAACCAAAGTAGAGAATCTTCTGGATGGCTTTTCGATGTCACAGATTTCTCTGCATTGCCAGGGCAAGGCATCCAGTGCGTTATTGAGGGAAAAAGGATTCTGGTTGGCAACAGGAAGTTGATGAATGAAAATGGAATCTCCATAGCACCTGATGTAGATAATTTCGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGTATTCTTGTTGCATGCAATGATGAATTAATTGGAGTTTTGGGAATAGCGGATCCACTTAAGCGAGAAGCTGCCGTTGTTGTTGAGGGTCTTGTGAAAATGGGTGTTTCTCCAGTCATGGTTACGGGTGATAATTGGAGAACAGCTCGGGCTGTTGCCAAAGAGCTTGGTATACAAGATGTGAGGGCAGAAGTAATGCCGGCAGGAAAAGCCGAAGTCATTCACAACTTCCAAAAGGACGGAAGCACAGTTGCAATGGTAGGTGACGGTATCAATGACTCGCCTGCTCTCGCTGCATCTGATATCGGAATCGCAATCGGTGCGGGAACTGATATTGCCATTGAGGCAGCAGACTTCGTCTTGATGAGAAATAATTTAGAAGATGTAATTACAGCCATCGATCTGTCAAGGAAGACTTTCAACCGAATTCGGTTGAATTACGTGTTTGCAATGGCGTACAATGTAATAGCAATTCCTGTTGCTGCCGGAGTCCTGTTTCCTTCTTTGGGGATTAAATTGCCTCCATGGGCAGCCGGTGCATGCATGGCTTTGTCATCTGTAAGTGTCGTTTGCTCTTCTTTACTTCTTAGGAGATACAAAAGGCCAAGACTCACAACAATACTGAAAATAACTGTAGAATAG 3027 44.17 MAPGLRDLQLAQVAAADPRLPDISSAAAELSDDLEDVRLLDSYEKQEENLGEIEEGMRRVQVSVSGMTCAACSNSVEAALRGVNGVLTASVALLQNRADVVFDSSLVKEEDIKEAIEDAGFEAEIIPEAPSVGKKSHGALVGQFTIGGMTCAACVNSVETILRDLPGVRRAVVALATSLGEVEYDPTITSKDDIVNAIEDAGFEASFVQSSEQDKLLLAVAGIAGEVDVQFLEVILSNLKGVRRFLFDSTSGTLEVIFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEATNMFWLFIPSLFLSVLIFLQQVICPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFIIGKRFYVAAARALRNGSANMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEREIDALLIQPGDMLKVLPGTKIPADGVVNWGSSYVNESMVTGESVPVLKEVNSHVIGGTINFHGALHIQATKVGSDTVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAIAFCTLFGWYVGGILGAYPAEWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGRATVTTAKVFTEISRGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDDPSATKNGENQSRESSGWLFDVTDFSALPGQGIQCVIEGKRILVGNRKLMNENGISIAPDVDNFVIELEESAKTGILVACNDELIGVLGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIHNFQKDGSTVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPVAAGVLFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILKITVE 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9239119 9245661 - CmaCh03G014840.1 Cma03g01484 291055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01484 1008 ProSitePatterns E1-E2 ATPases phosphorylation site. 665 671 IPR018303 -
Cma03g01484 1008 SUPERFAMILY Calcium ATPase, transduction domain A 463 549 IPR008250 -
Cma03g01484 1008 Gene3D - 762 813 IPR023299 GO:0000166
Cma03g01484 1008 Gene3D - 670 761 IPR023299 GO:0000166
Cma03g01484 1008 SUPERFAMILY HMA, heavy metal-associated domain 143 211 IPR036163 GO:0046872
Cma03g01484 1008 Gene3D - 142 207 - -
Cma03g01484 1008 Gene3D - 431 553 - -
Cma03g01484 1008 PANTHER HEAVY METAL P-TYPE ATPASE 24 1001 - -
Cma03g01484 1008 PANTHER ATP7, ISOFORM B 24 1001 - -
Cma03g01484 1008 Pfam haloacid dehalogenase-like hydrolase 659 896 - -
Cma03g01484 1008 Pfam Heavy-metal-associated domain 62 122 IPR006121 GO:0046872
Cma03g01484 1008 Pfam Heavy-metal-associated domain 144 204 IPR006121 GO:0046872
Cma03g01484 1008 PRINTS P-type cation-transporting ATPase superfamily signature 499 513 - -
Cma03g01484 1008 PRINTS P-type cation-transporting ATPase superfamily signature 663 677 - -
Cma03g01484 1008 PRINTS P-type cation-transporting ATPase superfamily signature 807 818 - -
Cma03g01484 1008 PRINTS P-type cation-transporting ATPase superfamily signature 829 839 - -
Cma03g01484 1008 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
Cma03g01484 1008 PRINTS P-type cation-transporting ATPase superfamily signature 905 917 - -
Cma03g01484 1008 ProSitePatterns Heavy-metal-associated domain. 146 175 IPR017969 GO:0046872
Cma03g01484 1008 SFLD Haloacid Dehalogenase 645 934 - -
Cma03g01484 1008 SUPERFAMILY Calcium ATPase, transmembrane domain M 400 970 IPR023298 -
Cma03g01484 1008 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 377 991 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cma03g01484 1008 ProSiteProfiles Heavy-metal-associated domain profile. 141 207 IPR006121 GO:0046872
Cma03g01484 1008 SUPERFAMILY HMA, heavy metal-associated domain 55 127 IPR036163 GO:0046872
Cma03g01484 1008 CDD P-type_ATPase_Cu-like 304 978 - -
Cma03g01484 1008 Gene3D - 630 939 IPR023214 -
Cma03g01484 1008 SUPERFAMILY HAD-like 662 988 IPR036412 -
Cma03g01484 1008 ProSitePatterns Heavy-metal-associated domain. 64 94 IPR017969 GO:0046872
Cma03g01484 1008 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 416 692 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma03g01484 1008 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 743 964 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma03g01484 1008 SUPERFAMILY HMA, heavy metal-associated domain 212 274 IPR036163 GO:0046872
Cma03g01484 1008 CDD HMA 61 124 IPR006121 GO:0046872
Cma03g01484 1008 Pfam E1-E2 ATPase 444 641 - -
Cma03g01484 1008 SFLD p-type atpase 645 934 IPR044492 -
Cma03g01484 1008 ProSiteProfiles Heavy-metal-associated domain profile. 59 125 IPR006121 GO:0046872
Cma03g01484 1008 ProSiteProfiles Heavy-metal-associated domain profile. 215 273 IPR006121 GO:0046872
Cma03g01484 1008 Gene3D - 57 128 - -
Cma03g01484 1008 TIGRFAM TIGR00003: copper ion binding protein 60 123 IPR006122 GO:0005507
Cma03g01484 1008 TIGRFAM TIGR00003: copper ion binding protein 143 205 IPR006122 GO:0005507
Cma03g01484 1008 CDD HMA 143 206 IPR006121 GO:0046872
Cma03g01484 1008 PRINTS H+-transporting ATPase (proton pump) signature 854 870 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma03g01484 1008 PRINTS H+-transporting ATPase (proton pump) signature 882 898 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma03g01484 1008 PRINTS H+-transporting ATPase (proton pump) signature 913 938 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01484 Cma-Chr3:9239119 Cma07g01142 Cma-Chr7:6242112 9.90E-14 dispersed
Cma03g01484 Cma-Chr3:9239119 Cma07g00030 Cma-Chr7:191702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01484 K17686 - csv:101205642 1807.34