Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00002 ATGGGTCTTCATAGCTTCTTCTTAATCCTTCTTACCGTCTCTTTCTTCTTCCAATTCCGCCTCTCCCTTTCCCAGAACCCCACAATTTGCCATTCCGATGATTTCAAGGCCTTGCAGGACTTCCACAGGGCGTTTGATTCCCAAATCGACGGATGGCACACCGACTGTTCGACGAATTGCTGCAGTTGTCTTGGCCTCACTTGTGACTCTTCTGGACGGGTTGTGAAGATGGAGCTTGGTGGTAGGAAGATCGAGGGTCAGTTACCTTACTCGATTGCAAGTTTGGAACACCTCAGAGTTCTCAATCTGTCTTCTAATTCTCTCAATGGGTCCATTCCCTTGGCTCTGTTTCATCTACCATACTTGGAAGTTCTTGATCTCAGTTTCAACGATTTGGCTGGGAGCATTTCATCAGGTACCATTAATTTGCCTTCCATCCGGCTTCTTAACGTTTCTCATAATAACTTTAATGGAAGTCTTCCACTTGGGGTTTGTGTTAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATCGTTTCACTGGTATGTTTCCTGTTGAGCTTGCTGAATGTGTTTCCTTGAAGAAACTGTTTGTGGAATCGAATTTACTCAGTGGTGGGATACCTGATGAGGCTTCTGGTTTGAGGAAATTGACACATTTTTGTGTTCAGAATAACAAGCTTTCTGGTTCTTTGAATGGTGGTGTTGGGAATCTCACAAACCTTGTTCGATTGGATTTGTCATCTAATGGGTTTTTTGGCGAAATTCCGGATGTTTTTTATAACTCTGTGAATTTGAGTTATTTTGCTACCGAATCTAATAGGTTTAGAGGAAAGATTCCCAATTCTTTGTCAAACTCTGCTTCACTCAATGTCCTAAATTTGAGGAACAATTCAATAGAGGGAACTCTTGATCTCAACTGTTCAGCAATGAAAAGCCTGGTTACACTTGATTTAGGCACTAATAGGTTGCATGGCTCTATACCAAGTAATCTTCCCTCTTGTACTCAATTGAGAAGTATAAACCTTGCTAGGAACAACCTTGGCGGTCAGATCCCCGAAAGCTTTAGGAATTTTCAGAGCCTCTCGTATTTATCACTTACGAATACGAGCATTGTTAATGTTTCGTCTGCTCTTAACATCTTGCAACATTGCAAGAATTTGAGTACAATGGTCCTTACCTTTAATTTTCATGGTGAAGTGTTGGAAGATGATCCTAACTTGCATTTCAAGAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATCATACCCCAGTGGTTGAGAGGTTCTAGGAAGCTGCAGTTGTTGGATTTGTCGTGGAACCGTCTTGGAGGAACTATTCCACCCTGGTTCAGCGAGTTGCGGTCCTTGTTTTACTTGGATTTATCTAATAATTCATTCACTGGATATATCCCTCAAGAGGTGACTAAAATGAGGAGTTTCATTGACAGAAAATTCTCGCTCGATGAACCTTCCTCACTAGATTTTTCCCTTTTTGTGACAAGAAATGGAACTGGATTGCAGTACAATCAAGTATGGAGGTTTCCACCCACTTTGAATCTCAGTCTCAACAATCTCAGTGGGCCAATCTCGCCAGAGTTTGGAAATCTTAAGGAAATTCTAGTTCTTGATCTGAAAATCAACAGCCTTTCGGGATCGATTCCGAGCAGCCTTTCGGGGATGGTTAGCCTAGAGACTCTGGATCTTTCTCACAACAATCTTTCAGGAATAATTCCTCCTTCACTGCAAAATCTCAATTTTTTGTCTAAGTTCAGTGTTGCATACAATCATTTACATGGGGCAATTCCTGAAGGAGGTCAGTTTCATAGCTTTGATAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCGAGACGGTATATGTACATCAATAGATCCTCTCATGCCATCCCACAAATCAAGAATGGATATAGGGAGTATTGTAGGTATGATTTTCGGTATTGTGTTTGGGATCATGTTTCTTATAACTCTTATGGTTGTGTTTATGCTTCGGGCTCCTCGTGGAAGAGTTGGAGATCCCGAAAATGAAGTGTCTAATACTGACGATAATGACTTGGAGGAAGGCAAGGCAGGATTGGTAGTTCTGTTCCAAAACAATAACAATGGAAGCCTCTCGCTGGAGGACATTTTGAAATGGACAAATGATTTTGATCAAGAAAATATCATAGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCAACCCTTCCTGACGGCAGAAAGGTTGCCATAAAACGGCTATCTGGAGATTGTGGTCAAATGGACAGAGAATTTCGGGCGGAAATCGAAACGCTTTCTGGTGCTCAGCATCAGAATCTTGTTCTTCTTCTAGGGTATTGTTTGTATAAAAATGACAGGCTTCTGATTTACTCTTTCATGGAGAATGGTAGCCTAGATTACTGGTTACATGAAAAACTTGATGGTCCGTCTTGCCTCAATTGGGATACCAGACTGCAGATTGCTCGGGGGGCAGCTGCAGGGCTGGCTTATTTGCATCAATCCTGTGAACCTCATATCCTCCATCGAGATATAAAGTCAAGTAACATTCTTTTAGACAAAAACTTTGAAGCTCACTTAGCCGATTTTGGTCTTGCCAGGCTCATTCTTCCCTATGATTCCCACGTCACGACCGATCTTGTTGGTACACTAGGCTACATTCCACCAGAGTACGGGCAATCCTCGGTGGCAACTTACAAAGGGGACGTGTATAGTTTTGGAGTTGTTCTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGAGTTCGAGACTTGATCTCTTGGGTGTTTCAAATAAGGGAAGACAGAAAAGTAAGTGAGGTGTTCGATCCATTAGTATACAATAAGCAGCATGAGACAGCGATGACTGAAGTTCTTGATATAGCATGCCTTTGCTTATGCAAGGTACCTAAAGAGAGGCCTTCAACTCAACAGCTGGTTTCTTGGCTTGATAAAAGTGTTGTGTTTTCATCCTTGATTTCGGTTATTAGTGCTATTCTTACTGATAAAATTTCCTCCCGTTTCGTTGTTTGGTTCTGGCAGGAGGGTAATTTTGATACAGGGTTTTCAGCGATGGCACCTAAAGCTGACAACACCAAGAAGGCTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAGTCCGGGCCAACTTTCAAAAAGGCTAAGAAGATCAGAACATCGGTCACATTCCATCGCCCAAGGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGACTCCTAGAAATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTGTCTAA 3579 41.69 MGLHSFFLILLTVSFFFQFRLSLSQNPTICHSDDFKALQDFHRAFDSQIDGWHTDCSTNCCSCLGLTCDSSGRVVKMELGGRKIEGQLPYSIASLEHLRVLNLSSNSLNGSIPLALFHLPYLEVLDLSFNDLAGSISSGTINLPSIRLLNVSHNNFNGSLPLGVCVNSSRIEILNLGFNRFTGMFPVELAECVSLKKLFVESNLLSGGIPDEASGLRKLTHFCVQNNKLSGSLNGGVGNLTNLVRLDLSSNGFFGEIPDVFYNSVNLSYFATESNRFRGKIPNSLSNSASLNVLNLRNNSIEGTLDLNCSAMKSLVTLDLGTNRLHGSIPSNLPSCTQLRSINLARNNLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNILQHCKNLSTMVLTFNFHGEVLEDDPNLHFKSLQVFIIANCGLKGIIPQWLRGSRKLQLLDLSWNRLGGTIPPWFSELRSLFYLDLSNNSFTGYIPQEVTKMRSFIDRKFSLDEPSSLDFSLFVTRNGTGLQYNQVWRFPPTLNLSLNNLSGPISPEFGNLKEILVLDLKINSLSGSIPSSLSGMVSLETLDLSHNNLSGIIPPSLQNLNFLSKFSVAYNHLHGAIPEGGQFHSFDNSSFEGNNFCVRDGICTSIDPLMPSHKSRMDIGSIVGMIFGIVFGIMFLITLMVVFMLRAPRGRVGDPENEVSNTDDNDLEEGKAGLVVLFQNNNNGSLSLEDILKWTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFRAEIETLSGAQHQNLVLLLGYCLYKNDRLLIYSFMENGSLDYWLHEKLDGPSCLNWDTRLQIARGAAAGLAYLHQSCEPHILHRDIKSSNILLDKNFEAHLADFGLARLILPYDSHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGVRDLISWVFQIREDRKVSEVFDPLVYNKQHETAMTEVLDIACLCLCKVPKERPSTQQLVSWLDKSVVFSSLISVISAILTDKISSRFVVWFWQEGNFDTGFSAMAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPRTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGIV 1192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7101 13595 + CmaCh04G000020.1 Cma04g00002 291083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00002 1192 PANTHER RECEPTOR-LIKE PROTEIN 55 14 267 - -
Cma04g00002 1192 SUPERFAMILY Protein kinase-like (PK-like) 714 999 IPR011009 -
Cma04g00002 1192 Hamap 50S ribosomal protein L23 [rplW]. 1112 1192 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cma04g00002 1192 Gene3D Transferase(Phosphotransferase) domain 1 804 1009 - -
Cma04g00002 1192 ProSitePatterns Ribosomal protein L23 signature. 1170 1185 IPR001014 -
Cma04g00002 1192 Pfam Protein kinase domain 729 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00002 1192 Gene3D Ribonuclease Inhibitor 143 232 IPR032675 -
Cma04g00002 1192 Gene3D Ribonuclease Inhibitor 233 331 IPR032675 -
Cma04g00002 1192 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1110 1185 IPR012678 GO:0003735|GO:0005840|GO:0006412
Cma04g00002 1192 PANTHER TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 172 1001 - -
Cma04g00002 1192 PRINTS Leucine-rich repeat signature 122 135 - -
Cma04g00002 1192 PRINTS Leucine-rich repeat signature 566 579 - -
Cma04g00002 1192 Gene3D Ribonuclease Inhibitor 34 142 IPR032675 -
Cma04g00002 1192 Pfam Ribosomal protein L23 1112 1173 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cma04g00002 1192 SMART serkin_6 728 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00002 1192 Gene3D - 1073 1192 IPR012677 -
Cma04g00002 1192 PANTHER TYROSINE-SULFATED GLYCOPEPTIDE RECEPTOR 1 14 267 - -
Cma04g00002 1192 Gene3D Ribonuclease Inhibitor 332 635 IPR032675 -
Cma04g00002 1192 Pfam Leucine rich repeat 413 471 IPR001611 GO:0005515
Cma04g00002 1192 Pfam Leucine rich repeat 91 132 IPR001611 GO:0005515
Cma04g00002 1192 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Cma04g00002 1192 SUPERFAMILY L domain-like 30 232 - -
Cma04g00002 1192 ProSiteProfiles Protein kinase domain profile. 728 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00002 1192 SUPERFAMILY RNI-like 168 483 - -
Cma04g00002 1192 PANTHER RECEPTOR-LIKE PROTEIN 55 172 1001 - -
Cma04g00002 1192 SMART LRR_typ_2 459 483 IPR003591 -
Cma04g00002 1192 SMART LRR_typ_2 95 119 IPR003591 -
Cma04g00002 1192 SMART LRR_typ_2 312 336 IPR003591 -
Cma04g00002 1192 SMART LRR_typ_2 240 263 IPR003591 -
Cma04g00002 1192 SMART LRR_typ_2 566 589 IPR003591 -
Cma04g00002 1192 SMART LRR_typ_2 143 167 IPR003591 -
Cma04g00002 1192 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515
Cma04g00002 1192 Pfam Leucine Rich Repeat 568 590 IPR001611 GO:0005515
Cma04g00002 1192 ProSiteProfiles Leucine-rich repeat profile. 568 591 IPR001611 GO:0005515
Cma04g00002 1192 Gene3D Phosphorylase Kinase; domain 1 689 803 - -
Cma04g00002 1192 SUPERFAMILY L domain-like 512 627 - -
Cma04g00002 1192 Pfam Ribosomal protein L23, N-terminal domain 1054 1101 IPR005633 -
Cma04g00002 1192 ProSitePatterns Protein kinases ATP-binding region signature. 734 756 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00002 Cma-Chr4:7101 Cma04g00977 Cma-Chr4:5034444 0 dispersed
Cma04g01206 Cma-Chr4:6150729 Cma04g00002 Cma-Chr4:7101 1.91E-95 dispersed
Cma04g02609 Cma-Chr4:17839731 Cma04g00002 Cma-Chr4:7101 3.44E-100 dispersed
Cma15g00414 Cma-Chr15:1859116 Cma04g00002 Cma-Chr4:7101 1.94E-98 dispersed
Cma04g00002 Cma-Chr4:7101 Cma15g00864 Cma-Chr15:4355842 6.67E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68450 PF00069 Pkinase 2.20E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00002 - - bhj:120069286 1585.85