Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00009 ATGTCACGGAAGGGTTTGATGGAGCAGGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCACTATCACCAGAAGTTATATCTCGTCAAGCTACCATTAATATTGGTACTATTGGTCATGTGGCACATGGGAAATCTACTGTTGTAAAAGCAATTTCAGGAGTCCAGACAGTACGTTTTAAGAATGAGTTGGAGCGTAACATTACCATTAAGCTGGGGTATGCTAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGTCCAATGTGCTACAAGGCGTATGGAAGTGGAAAGGAAGACAGTCCTGTATGTGATGTGCCTGGGTTTGAAAATTGCAGGATGAAACTATTGCGACACGTATCCTTTGTTGACTGCCCGGGTCACGATATTCTTATGGCTACCATGCTTAATGGAGCAGCCATTATGGATGGAGCATTACTTCTGATAGCAGCAAATGAAAGCTGCCCTCAACCTCAAACCTCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAAGAAAATGTAGCAATCAATCAACATGAAGCAATTCAAAAATTTATTCAAGGAACTGTTGCCGATGGTGCACCAGTAGTACCAATTTCTGCTCAGCTGAAGTACAATATTGATGTTGTTTGCGAGTATATAGTGAAAAAGATTCCAATTCCTGAAAGGAATTTTGTCTCTCCACCTAATATGATTGTGATTCGATCTTTTGATGTTAACAAACCTGGATTTGAAGTTGACGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATATTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGTCCGGGGATTGTGGTTAAGGATGAAAGTGGTAACATCAAGTGCACCCCAATATACTCGAGGATTGTTTCTTTGTATGCAGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTTATTGGAGTTGGCACAACCATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGTCAGGTTCTTGGAGAAGTCGGATCACTTCCTGATGTTTTTGTTGAGCTAGAGGTGAACTTTTTCCTTCTGCGGCGGCTCCTAGGTGTCAGGACGAAAGGATCAGAAAGGCAGGGAAAAGTATCAAAATTGGCTAAGGGAGAGATTCTAATGTTGAACATAGGATCCATGTCTACAGGAGCTAGAGTACTTGCAGTTAAGAATGATTTAGCGAAGTTGCAGCTTACCTCTCCTGTTTGCACCAGCAAGGGGGAGAAGATTGCTCTAAGTCGTCGAGTCGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAACGACCCTCGACGATGACCTCAACTCCACTTCTTTTAAAGTGAAAGTATCTGTAAATAACTCAGGAAATGATCGAGAAATCGATGTTTATGGTACATTTGTTCAACATACTTCCAATAAGAAGAATATGGAATGCATTACAGATGAATGTGAAGTCAAAGATCATCTTGAAAATTCTATGCCCCTCTCAATTGATACAAAATTTTATTTTACTCTTGTGTTTCTTCAAAAGTTAAAATGTCTTGTGCATGAATCTTCTGTTGACCTTATATGGGGGCCACCTTGGACTGGAAAGACGAAAACGAATAGATGCAGAACTATGATAGTAGCTCCAACAAATGTTGCCATTGTGGAAGTGGCCTCAAGAATTTTCGAGTTGGGAAACTTGTGGAGTTCCTCATTTCTTGGTTCTCGACTCCGAGCTTGTCTTGCATTCTTCATTACCCATTTACCTAGGAAATGCCTTTCGGAGCATGATTTTAAGGATGTGACTTCTCTTGTTAAAAAACTAGATTATTTTGAAGATTTACTGTCTCGAGAATCCCTTGATTCTGAAGCACTTGAGGATGTTTTTTCATGTCCCATTGATGGTGAAGCTCTTCATACATGTACAGATTTTGCGTGTTTGTTCAACATGACAAGAAGTGACTGCCTTTCTATTTTAAAATCTCTCCATTGCTCCTTAACTGCACTCAAGCTTCCAAAAGTCACATACAGACTGTCAATTGAGCATTTTTTCTTTCAGAATGCGACTTTGGTCTTTTCCACCGCTTCAAGTTCGTATAGGTTACATTCTATGTCGATAGACCCTTTCAAAGTATTAGTAATTGATGAAGAAGCACAACTAAAAGAGTGCGAGTCGTTGATTGCATTACGACTTCCGTATATCAAACATGTTGTACTCATAGGCGACGAGTGCCAATTACCAGCAATGGTTGAAAGCAAGCTTGCTGATGATGCTGGCTTTGGAAGAAGTTTATTCGAGAGGTTCAGCTCTTTGGGACACCCAAGACACCTTATGAATGTGCAGTACAGAATGCATCCATCTATTAGTTTATTTCCTAATTCAAAATTCTATTTTAGTCAGATCTTAGATGGTCCAAATGTTACGAGTTTAAACTATCAGATGAACTATCTTTTTAAATCCATGTTATGGAAGAGAGGAAAAGATGATATTGGACATAGTCGAAAGAATATGCTCGAGGTGGCTGTTGCTTCGAAAATAGTGCAAAGTTTGTATAAAGAGTGGAAAAACTCAAAAGGGAATCTAAGCATTGGTGTTATATCACCATATTCTGCTCAAGTAACCACTATTGAAGAGAAACTTGGACACAGATACGATAACCTTGATGGGTTTAGTGTGAAGGTGAAATCTGTTGATGGCTTTCAAGGTGGGGAAGAGGATATAATCATTATATCTACTGTTAGATCAAATACAGGTTCTTCACTTGGATTCTTATCATGTGATCAGAGGAAAAATGTAGCTCTTACAAGAGCTAGATATTGTCTATGGATATTAGGGAATGATAAAACATTGTCGATTAGTGAGTCCTCTTGGGCTCATTTGGTTCGTGATGCTAAGAATCGTGGTTGTTTCTTTAATGCTGACGATGACGAGAACTTGGCCAAAGCTATATTGGATATCAAGGAAGAATTCAATCAACTTGATGATTTATTGAAAGGAGACAGTATTCTTTTCAGAAATGCTAGATGGAAGGTTCTATTCAGTGATAGATTTTTGAAATCATTCAAGAAATTCAACCATGGAGATGAAGAAGAAGATATTGAATCTTCTACTCAAACTTTCCGGTGGATGGAGGCCCAAAAGGAGGGACTTAAATCTGGTATGTGGAAGTTCAACGAGGATTTTGAAGAAAATCAAGGTCGAATGCCTCTATGTTATCTGTGCCATTGA 3276 39.56 MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMCYKAYGSGKEDSPVCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLDDDLNSTSFKVKVSVNNSGNDREIDVYGTFVQHTSNKKNMECITDECEVKDHLENSMPLSIDTKFYFTLVFLQKLKCLVHESSVDLIWGPPWTGKTKTNRCRTMIVAPTNVAIVEVASRIFELGNLWSSSFLGSRLRACLAFFITHLPRKCLSEHDFKDVTSLVKKLDYFEDLLSRESLDSEALEDVFSCPIDGEALHTCTDFACLFNMTRSDCLSILKSLHCSLTALKLPKVTYRLSIEHFFFQNATLVFSTASSSYRLHSMSIDPFKVLVIDEEAQLKECESLIALRLPYIKHVVLIGDECQLPAMVESKLADDAGFGRSLFERFSSLGHPRHLMNVQYRMHPSISLFPNSKFYFSQILDGPNVTSLNYQMNYLFKSMLWKRGKDDIGHSRKNMLEVAVASKIVQSLYKEWKNSKGNLSIGVISPYSAQVTTIEEKLGHRYDNLDGFSVKVKSVDGFQGGEEDIIIISTVRSNTGSSLGFLSCDQRKNVALTRARYCLWILGNDKTLSISESSWAHLVRDAKNRGCFFNADDDENLAKAILDIKEEFNQLDDLLKGDSILFRNARWKVLFSDRFLKSFKKFNHGDEEEDIESSTQTFRWMEAQKEGLKSGMWKFNEDFEENQGRMPLCYLCH 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48938 56482 + CmaCh04G000090.1 Cma04g00009 291090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00009 1091 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 458 - -
Cma04g00009 1091 Pfam AAA domain 777 963 IPR041679 -
Cma04g00009 1091 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Cma04g00009 1091 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Cma04g00009 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 980 IPR027417 -
Cma04g00009 1091 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Cma04g00009 1091 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Cma04g00009 1091 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Cma04g00009 1091 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Cma04g00009 1091 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Cma04g00009 1091 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Cma04g00009 1091 CDD SF1_C_Upf1 800 981 IPR041679 -
Cma04g00009 1091 Gene3D - 462 797 IPR027417 -
Cma04g00009 1091 Gene3D Translation factors 357 457 - -
Cma04g00009 1091 Gene3D - 798 1002 IPR027417 -
Cma04g00009 1091 Gene3D Translation factors 242 356 - -
Cma04g00009 1091 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 458 - -
Cma04g00009 1091 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Cma04g00009 1091 Pfam AAA domain 695 769 IPR041677 GO:0004386
Cma04g00009 1091 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Cma04g00009 1091 Gene3D - 30 240 IPR027417 -
Cma04g00009 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Cma04g00009 1091 CDD eIF2_gamma_III 357 451 IPR015256 -
Cma04g00009 1091 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Cma04g00009 1091 SUPERFAMILY Translation proteins 240 354 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00009 Cma-Chr4:48938 Cma09g00651 Cma-Chr9:3092603 1.34E-47 dispersed
Cma04g00009 Cma-Chr4:48938 Cma04g00013 Cma-Chr4:63077 4.66E-07 proximal
Cma04g01881 Cma-Chr4:9647972 Cma04g00009 Cma-Chr4:48938 1.99E-06 transposed
Cma09g01171 Cma-Chr9:6960113 Cma04g00009 Cma-Chr4:48938 1.68E-24 transposed
Cma04g00009 Cma-Chr4:48938 Cma04g00975 Cma-Chr4:5014292 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00009 K03242 - csv:116403970 894.419