Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00016 ATGGTAGAAAAGACAAGTGCTGGGATGAGTATGAAGATGCAGCAGAGCCACCACTCAGTGGCTGTGAGGTATAATGAGCAAATTGGAAGCAAAAAAGGGGTCACCTTCATTCAAGCCAACAGGGCTTGGCTTCCCAAGTTTTTGTTGCTTTGGGTTCTGTTGGTGGCATTCATTAGTATGCTGATCTACAAGGGAATGGAGGCTGACAACAAGGTTAGAAGAAGGGAAGTCTTGGGGAGCATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTCAGCGTCAGCGTCAACCATGTCCATGCTTTGGCTATTCTCATTTCCACTTTCCACTACTTCAAGAACATATCAGCAATCGATCAGGAAACTTTTGCTGAGTACACAGCCAGAACTGCTTTCGAGCGGCCTTTGCTCAGTGGTGTGGCATTTGCGCAAAGAGTGGTGCACTCGGAGCGAGAGAAATTCGAGATGCAACATGGTTGGACTATAAAAACGATGGAAAGGGAAGCATCACCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAAACTGTTTCCTACATTGAATCTCTCGATATGATGTCTGGAGAGGAGGACCGTGAAAACATTTTGAGATCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGGCTACTGGGTTCTCACCATCTTGGAGTTGTGCTGACGATCCCTGTTTATAAAACCAAGCTTCCGGCAAATCCAACTATGGATGAGCGAACTCGAGCAACAGCAGGTTACCTTGGTGGAGCATTTGATGTGGAATCACTTGTCGAAAATTTGCTTGGGCAACTTGCTGGAAATCAGGCCATTTTGGTGAATGTATACGATATCACGAACTATTCTGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGGTGACATGTCTCTTTTGCACGAAAGCAAATTAGATTTTGGAGATCCATTTAGGAAGCATGAGATGATATGCAGATATCATCAGAAAGCACCAACATTATGGACGGCACTTACTACTGCATTCTTATTCTTTGTGATTGGATTATTAGTGGGATATATATTATACGGCGCAGCAACTCATATCGTTAAAGTTGAGGATGATTTCAATGAAATGCAAGAATTGAAAGTTCTAGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTTGCGACCGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTCTACTTCTAGATACAGAATTGAGTTCAACTCAAAGGGATTACGCTCAAACTGCCAAGGCCTGTGGAAAAGCACTGATAGCGCTAATAAATGAAGTGCTTGACCGGGCGAAAATTGAAGCTGGGAAGTTGGAGCTTGAGGCGGTTCCTTTCGACCTTAGATTGATACTAGATGATGTTCTGTCTTTGTTTTCTGAAAAGTCACGGCACAAGGGAGTAGAGTTGGCAGTGTTTGTTTCTGACAAAGTTCCTGAAATCGTTATGGGGGATCCTGGAAGGTTCAGACAAGTAATCACAAATCTTGTGGGCAACTCTGTAAAATTCACAGAACAAGGACATATATTCGTCAAAGTCCAATTAGCCGAACAATCAATGGCTTCTACGAATATCAAATCTGAAACTCATGTGAACGGAAACTTAGATGATGGTGCATCGTACAATAAGCATCAGTTTCAAACCTTAAGTGGATGTGAGGCCGCTGATAACCAAAACAGTTGGGATACTTTCAAGCATCTCATTGCAAATGACGAACAACCAAACACTTCAAGCAATTTTACGGTTACGAATGAAAGTTCTGATATTGTTACTGTTATGATATCGGTGGAAGATACAGGAATCGGGATTCCCTTATGTGCCCAAGGTCGAGTCTTTATGCCCTTCATGCAAGCAGATAGCTCAACCTCTAGAAACTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAGTGTCTGGTAGAACTAATGGGCGGTCAGATAACCTTTGTAAGCCGTCCCGAGGTTGGGAGCACATTCTCATTCACTGCTGTTTTTGGAAAATGTGAGAAGAAAGCGACAGTCGACATTAAAAAGCCTAATTTGGAGGAACTTCCTTCTGCATTTAGAGGACTGAAATCTGTCGTAATTGATGGGAAACCAGTTAGAGCTGCTGTGACCAAATACCATTTGAAGAGACTTGGCATCCTGGTGGAAGTTGCCAGTAGTGTCAAGATGGCTGCAGCTTTATGGGGAAAAAATGGCTCTGTTAGATCAAGTAATATCTTTCAGCCTGACGTAATTTTTCTTGAGAAAGATATCTTTTTTTCAAGTGAGGAACGTGGTTCTTCTAATCTACTTCATCAACTAGACTGGAAGCAGAATGGTCATGCCTTTAAGTTGCCGAAATTAATCCTTCTCGCGACCAGCATAAGCAAGGATGAATTTGATAAAGCGAAGGAAGCAGGTTTTTCAGACACCTTGGTCATGAAACCACTAAGAGCAAGCATGATAGGTGCATGTCTTCAACAGGTGCTTGGCTCGGGAAAGAAACGGCAGCTTGGAAAGGGCACGGCAAATGGCTCCAACTTTCTTAGAGGGCTGCTCTGTGGTAAGAAAATATTGGTTGTTGATGACAATATGGTGAACCGAAGAGTCGCTGCAGGTGCTTTGAAGAAATTTGGTGCCGATGTAGAGTGTGCTGAGAGTGGAAAAGCTGCTCTGACATTGCTTCAACTTCCACACAGTTTTGACGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTCGAAGTGACCCGAAGAATCAGGCTGATGGAGAGCAAGGCAAAGGAAGCAGTGGTTAGAGAATCTGGTGGGAAAGAAAATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCCATGACCGCGGACGTTATTCACGCAACGTGCGACAAGTGCCAGGCAAGTGGGATGGATGGATACGTATCAAAACCATTCGAGGAAGAGAATCTGTACCAGGCAGTTTCCGAGTGTTTCAAGTCAAAGGCCATCACGGATTCATGA 3039 43.53 MVEKTSAGMSMKMQQSHHSVAVRYNEQIGSKKGVTFIQANRAWLPKFLLLWVLLVAFISMLIYKGMEADNKVRRREVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYFKNISAIDQETFAEYTARTAFERPLLSGVAFAQRVVHSEREKFEMQHGWTIKTMEREASPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDITNYSDPLVMYGHQYEDGDMSLLHESKLDFGDPFRKHEMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFNEMQELKVLAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAKACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMASTNIKSETHVNGNLDDGASYNKHQFQTLSGCEAADNQNSWDTFKHLIANDEQPNTSSNFTVTNESSDIVTVMISVEDTGIGIPLCAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQITFVSRPEVGSTFSFTAVFGKCEKKATVDIKKPNLEELPSAFRGLKSVVIDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSSNIFQPDVIFLEKDIFFSSEERGSSNLLHQLDWKQNGHAFKLPKLILLATSISKDEFDKAKEAGFSDTLVMKPLRASMIGACLQQVLGSGKKRQLGKGTANGSNFLRGLLCGKKILVVDDNMVNRRVAAGALKKFGADVECAESGKAALTLLQLPHSFDACFMDIQMPEMDGFEVTRRIRLMESKAKEAVVRESGGKENARKDEWHVPILAMTADVIHATCDKCQASGMDGYVSKPFEEENLYQAVSECFKSKAITDS 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 74939 81481 + CmaCh04G000160.1 Cma04g00016 291097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00016 1012 CDD HisKA 388 449 IPR003661 GO:0000155|GO:0007165
Cma04g00016 1012 SUPERFAMILY CheY-like 705 842 IPR011006 -
Cma04g00016 1012 Gene3D - 66 118 - -
Cma04g00016 1012 CDD REC_hyHK_CKI1_RcsC-like 869 1000 - -
Cma04g00016 1012 PANTHER HISTIDINE KINASE 4 29 1008 - -
Cma04g00016 1012 Pfam Response regulator receiver domain 869 1000 IPR001789 GO:0000160
Cma04g00016 1012 SMART HKATPase_4 500 683 IPR003594 -
Cma04g00016 1012 Gene3D CHASE domain 119 334 IPR042240 -
Cma04g00016 1012 CDD HATPase_EvgS-ArcB-TorS-like 505 681 - -
Cma04g00016 1012 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 380 454 IPR036097 GO:0000155|GO:0007165
Cma04g00016 1012 SUPERFAMILY CheY-like 866 1003 IPR011006 -
Cma04g00016 1012 ProSiteProfiles CHASE domain profile. 115 327 IPR006189 -
Cma04g00016 1012 Pfam CHASE domain 118 298 IPR006189 -
Cma04g00016 1012 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 1008 - -
Cma04g00016 1012 ProSiteProfiles Response regulatory domain profile. 708 841 IPR001789 GO:0000160
Cma04g00016 1012 ProSiteProfiles Response regulatory domain profile. 868 1004 IPR001789 GO:0000160
Cma04g00016 1012 PRINTS Bacterial sensor protein C-terminal signature 608 622 IPR004358 GO:0016310|GO:0016772
Cma04g00016 1012 PRINTS Bacterial sensor protein C-terminal signature 626 636 IPR004358 GO:0016310|GO:0016772
Cma04g00016 1012 PRINTS Bacterial sensor protein C-terminal signature 643 661 IPR004358 GO:0016310|GO:0016772
Cma04g00016 1012 PRINTS Bacterial sensor protein C-terminal signature 667 680 IPR004358 GO:0016310|GO:0016772
Cma04g00016 1012 Gene3D - 361 451 - -
Cma04g00016 1012 Coils Coil 438 458 - -
Cma04g00016 1012 Gene3D - 452 686 IPR036890 -
Cma04g00016 1012 SMART CHASE_2 115 300 IPR006189 -
Cma04g00016 1012 SMART REC_2 867 1000 IPR001789 GO:0000160
Cma04g00016 1012 Pfam His Kinase A (phospho-acceptor) domain 388 453 IPR003661 GO:0000155|GO:0007165
Cma04g00016 1012 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 680 IPR003594 -
Cma04g00016 1012 Gene3D - 702 845 - -
Cma04g00016 1012 Gene3D - 863 1011 - -
Cma04g00016 1012 SMART HisKA_10 388 453 IPR003661 GO:0000155|GO:0007165
Cma04g00016 1012 ProSiteProfiles Histidine kinase domain profile. 395 683 IPR005467 -
Cma04g00016 1012 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 442 678 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00016 Cma-Chr4:74939 Cma04g02142 Cma-Chr4:14984183 0 dispersed
Cma09g00387 Cma-Chr9:1623094 Cma04g00016 Cma-Chr4:74939 2.16E-16 dispersed
Cma16g01243 Cma-Chr16:9398969 Cma04g00016 Cma-Chr4:74939 3.73E-07 dispersed
Cma04g00016 Cma-Chr4:74939 Cma15g00887 Cma-Chr15:4518099 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34731 PF02518 HATPase_c 1.20E-31 CL0025 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00016 K14489 - csv:101204531 1786.16