Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00024 ATGGCAACGGTTCCGATGGCAAGTTTGAGCAACGGGCAGTTGATTCCGGTGATGGGGATGGGGACAATGTCGGCAGTGGGACCAGAGGCAACGAGAACGGCCATCGTGGAGGCGATCCGGGCCGGGTATCGTCATTTCGACACGTCCTATTCGTACGGGACGGAGAAACCACTTGGGGCGGGGATCAGGGAGGCGTTGGAGGCTGGACTTATAAAGTCCAGAGACGAGCTGTTCATTACCTCCAAGCTGTCTTGTGGTTTTGCTGATCCGCCTGTTGTTGTTGATGGGATTAGGGGCAGCCTCAGGAACTTGGGATTGGAGTATGTGGATATGTATCTGATCCACATGCCATTGAAGCTGAATCCTCAAGTGCGTCGAATCCCAGTGGCAAAGGAGGACATTTTTGCGATGGATCTCAAAGGGGTTTGGGAGGGAATGGAAGAAGGCCAAAGGCTGGGCCTCACCAAAGCCATCGGCGTCAGTAATTTCTCTCCCAGAAGGCTTCAAGAACTGCTCTCCTTTGCCAAAATACCCCCAGTGATCAATCAAGTGGAGATGAGCCCACTTTGGCATCAGAACAAACTAAGGGAGTTTTGTAAACAGAAAGGCATTCATATAACAGCCTATTCTCCTCTGGGTGCCGTCGGGACATTCTGGGGCCACAATAAAATTGTGGATTCTGATGTTATAGCTGAAATAGCCAAGCTTAAGGGGAAAACAACTGCTCAGATTGCATTGAGATGGGTTTATGAGAAAGGGGTGAGCATAGTGGCGAAGAGCTTCGACAGAGAGAGAATGAGACAGAACATTGACATCTTTGACTGGTCATTGACTGAGGAGGAATCGGCTAAGATCGATGAACTTCCTCAGCACAAAGCTGTTGTGTTCGCCAATATCTATGGGCCTCATGACGTGGTACTCGAGCTTGACGCTGAGCTTTGA 942 50.11 MATVPMASLSNGQLIPVMGMGTMSAVGPEATRTAIVEAIRAGYRHFDTSYSYGTEKPLGAGIREALEAGLIKSRDELFITSKLSCGFADPPVVVDGIRGSLRNLGLEYVDMYLIHMPLKLNPQVRRIPVAKEDIFAMDLKGVWEGMEEGQRLGLTKAIGVSNFSPRRLQELLSFAKIPPVINQVEMSPLWHQNKLREFCKQKGIHITAYSPLGAVGTFWGHNKIVDSDVIAEIAKLKGKTTAQIALRWVYEKGVSIVAKSFDRERMRQNIDIFDWSLTEEESAKIDELPQHKAVVFANIYGPHDVVLELDAEL 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 121228 122720 - CmaCh04G000240.1 Cma04g00024 291105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00024 313 PIRSF AKR 1 304 IPR020471 GO:0016491
Cma04g00024 313 PANTHER ALDO/KETO REDUCTASE 11 312 - -
Cma04g00024 313 Pfam Aldo/keto reductase family 19 288 IPR023210 -
Cma04g00024 313 ProSitePatterns Aldo/keto reductase family signature 2. 146 163 IPR018170 GO:0016491
Cma04g00024 313 PANTHER D-GALACTURONATE REDUCTASE-LIKE 11 312 - -
Cma04g00024 313 ProSitePatterns Aldo/keto reductase family putative active site signature. 257 272 IPR018170 GO:0016491
Cma04g00024 313 SUPERFAMILY NAD(P)-linked oxidoreductase 9 298 IPR036812 -
Cma04g00024 313 CDD AKR_AKR4A_4B 11 290 IPR044497 GO:0016616
Cma04g00024 313 ProSitePatterns Aldo/keto reductase family signature 1. 42 59 IPR018170 GO:0016491
Cma04g00024 313 PRINTS Aldo-keto reductase signature 38 62 IPR020471 GO:0016491
Cma04g00024 313 PRINTS Aldo-keto reductase signature 99 117 IPR020471 GO:0016491
Cma04g00024 313 PRINTS Aldo-keto reductase signature 146 163 IPR020471 GO:0016491
Cma04g00024 313 PRINTS Aldo-keto reductase signature 180 209 IPR020471 GO:0016491
Cma04g00024 313 PRINTS Aldo-keto reductase signature 224 248 IPR020471 GO:0016491
Cma04g00024 313 Gene3D - 1 301 IPR036812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00024 K19642 GALUR; D-galacturonate reductase [EC:1.1.1.365] - csv:101206206 522.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00024 Cma-Chr4:121228 Cma16g00200 Cma-Chr16:897890 3.45E-80 dispersed
Cma04g00024 Cma-Chr4:121228 Cma07g01013 Cma-Chr7:5243336 1.05E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g558 . . . . . . Bma14g01967 . . . . Cma04g00024 . Car04g00033 . . . Bhi07g00153 . . . Hepe01g0358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003041 0 2 2 1 1 2 1 2 2 3 2 2 1 2 3 1 2 2 1 2 3 1 3 2 2 2 1 1 1 3 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00024 Cma_Chr04 FPKM 19.601881 18.177729 0.0 0.0 0.0 0.0 0.0 0.4477 0.331435 0.299807