Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00026 ATGATGAAGCTATGGCGCAGGACTGCCGGAGCAATCAAGGACCGAAGCAGCATTTGGCTGGCCACCCTTTCACCCCGCACGCCCTACCGCCACCCCGACCTCGAGGCTGCCATCATCCGAGCCACCAGCCATGACGGTGCTAAAATAGACTACACCAATGCCCGCCGCGTCTTTCAATGGATCCGAACCTCTCCCGTCTACCTCAAGCCTCTCGCCTTGGGCCTCTCCTCCCGTATGGAGAAGACACGAAGCTGGGTTGTCGCTCTAAAGGGTCTTATGCTCATCCATGGCGTTTTTTGTTGCCAAATTCCCTCCGTCCAGCGCATGGGCCGTCTGCCTTTCGATCTCTCTGCCTTCGAAGATGCCCATTCCAATTCATCCAAGACTTGGGGTTATAACGCCTTCGTCAGAAGCTATTACGCATATCTGGATCAGAAGTCCTCGCTCATTTCTTCTGAAGCCAAGAATGTGAAGAAAGAGTTGAAGCCCCTATTGTTGGATGAGTTGATTAAGATTCAAACTTGGCAGTCCATGTTGGATATGTTGCTTCAAGTTCGACCCTTGGATGAGGATATGAAGGGGGGCTTAGTTTTGGAGGCCATGAACAATCTCATCTTTGAGATTTTTGACGTTTACAGCCAAATCTGCAACGGAATTGCTCAAGTTCTGTTGGACATTTACGAGACACCAGGGAAACCCGAAGCATCATTGGCACTTCAAGTCGTCAAAAAAGCAGCAACGCACGTAGAAGATTTGACTCAATACTTTGAGATATGTAGAGAAATGGGTGTTTTGAATGCATCTCAGAGCCTAAAATTGGAGAAGATCCCAGAAGAAGATATCAAAGATCTTGAGAAAATTATCAACGGAAGCGTTAATTTTCATGGGAAAGATAATGGCGGAGAGATGAGGAGTGAGCTTAGAAATGGATCAAAGAGGGGGTTGAAGACTGTGATTACAGACAAATGGGAGAGATTTGATGCAGATTGTTGTTCATCAACCACTTTACAAACCCCTTTTGCAAGCTGTTCTTCTTCCCATTTGAGCCTTGTTTCTAAACCAGTACATAAACAAGACTTACCTGACTTGATCACTTTCTAG 1101 46.68 MMKLWRRTAGAIKDRSSIWLATLSPRTPYRHPDLEAAIIRATSHDGAKIDYTNARRVFQWIRTSPVYLKPLALGLSSRMEKTRSWVVALKGLMLIHGVFCCQIPSVQRMGRLPFDLSAFEDAHSNSSKTWGYNAFVRSYYAYLDQKSSLISSEAKNVKKELKPLLLDELIKIQTWQSMLDMLLQVRPLDEDMKGGLVLEAMNNLIFEIFDVYSQICNGIAQVLLDIYETPGKPEASLALQVVKKAATHVEDLTQYFEICREMGVLNASQSLKLEKIPEEDIKDLEKIINGSVNFHGKDNGGEMRSELRNGSKRGLKTVITDKWERFDADCCSSTTLQTPFASCSSSHLSLVSKPVHKQDLPDLITF 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 126329 127877 - CmaCh04G000260.1 Cma04g00026 291107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00026 366 ProSiteProfiles ENTH domain profile. 26 157 IPR013809 -
Cma04g00026 366 PANTHER CLATHRIN ASSEMBLY PROTEIN 2 364 IPR045192 GO:0048268|GO:0072583
Cma04g00026 366 Pfam ANTH domain 33 289 IPR011417 GO:0005543
Cma04g00026 366 SUPERFAMILY ENTH/VHS domain 33 150 IPR008942 -
Cma04g00026 366 CDD ANTH_N_AP180_plant 34 149 - -
Cma04g00026 366 PANTHER OS08G0467300 PROTEIN 2 364 - -
Cma04g00026 366 Gene3D ANTH domain 155 299 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cma04g00026 366 Gene3D - 5 153 IPR008942 -
Cma04g00026 366 SUPERFAMILY GAT-like domain 169 289 - -
Cma04g00026 366 SMART enth_2 32 157 IPR013809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00026 - - - csv:101214877 544.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00026 Cma-Chr4:126329 Cma04g01877 Cma-Chr4:9587874 0 dispersed
Cma04g00026 Cma-Chr4:126329 Cma11g00534 Cma-Chr11:2559212 1.09E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g553 . . . . . . Bma14g01890 . . . . Cma04g00026 . Car04g00035 . . . Bhi07g00107 . . . . . . . . . . . . . . . . . . . . . . Blo11g00959 Bda07g01710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00988 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009008 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00026 Cma_Chr04 FPKM 1.296528 2.512819 5.44346 5.294899 4.872114 5.288206 5.407109 6.316261 5.562932 6.398549