Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00028 ATGACCGCTGCTGGCGGTGGCGGAGAAGGTCGGAGTGGAATTTCCAATGCCCTCCTACTCGCTTATTTCGATTTCCAATCCCGCTCTCTCTCTCATCAGCCTGTTGCAAAATATGGTACTGGTTCAGATTTGCCTTACAGAATGGCTGTTCATCCAGCTGGAGATGGAATTATATGTTCTTTGCCAAAAAGTTGCAGCTTGTTTAAATTGGATACCAAAAAGGACGCTGGAGACAATAAACTTGGGCTAAAACTCTCTCAGGAGGTGCTCAGCCAGTTGGCAGATGTTGGACTACAATTAGCTTTGGCATTTAATAATGAGGGCTCTTTGCTTGCTACAGGTGGTGAGGATGGAAATTTAAGGGTCTTCAAGTGGCCTAGCTTGGACATTATTCTCAATGAGCCCAGTGCCCATTCTAGTGTGAAGGACTTGGATTTCAGTTATGATGGTAAATATCTGGTCTCCTTAGGTGGCCCTTGTAGAGTGTGGGATGTGACTTCATCAAGTGTAGTAACTTCTCTTACAAAAGAAAATGATGAGGTTTTTATCTCATGTAGATTTTCAATGACCATTGATGGAAATATGGTTTTATATACTGCTGCAGTGACTGGCAGAGGTGGAAGCATTATAACCTGGAATGCAACCACGTGGAGGAGGGTAGCCTCAAAGCTCATTACTCGTGATAATATTACTGCATTCAATGTTTCGACTAATGGAAAACTCCTTGCCTGTGGCACAGCTCAGGGTGATGTTCTGGTCATAAATTCAACCAGCATGCGAGTTCAACAGATAGTTAAAAAGGCACACCTTGGTTTTGTAACTGCACTGAGCTTTTCTCGCGATTCAAGGGCTTTGGCTTCCGCATCAATGGACTCGAGTGCTAGGGTGACTGTAATTGAAGAGAAACAGAAAAAAGGAATGAGCTTGTGGGTCATCATATTCATCTTGCTTATTGCCATTGCTGCCTATTTTATCAATGCTGAAATTCTCAAGCTTGAGCTTCCCAGCTTTTCCCATCGTAAATGA 1026 43.27 MTAAGGGGEGRSGISNALLLAYFDFQSRSLSHQPVAKYGTGSDLPYRMAVHPAGDGIICSLPKSCSLFKLDTKKDAGDNKLGLKLSQEVLSQLADVGLQLALAFNNEGSLLATGGEDGNLRVFKWPSLDIILNEPSAHSSVKDLDFSYDGKYLVSLGGPCRVWDVTSSSVVTSLTKENDEVFISCRFSMTIDGNMVLYTAAVTGRGGSIITWNATTWRRVASKLITRDNITAFNVSTNGKLLACGTAQGDVLVINSTSMRVQQIVKKAHLGFVTALSFSRDSRALASASMDSSARVTVIEEKQKKGMSLWVIIFILLIAIAAYFINAEILKLELPSFSHRK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 133752 145001 + CmaCh04G000280.1 Cma04g00028 291109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00028 341 Pfam WD domain, G-beta repeat 101 123 IPR001680 GO:0005515
Cma04g00028 341 Pfam WD domain, G-beta repeat 267 296 IPR001680 GO:0005515
Cma04g00028 341 Gene3D - 1 305 IPR015943 GO:0005515
Cma04g00028 341 PANTHER PROLACTIN REGULATORY ELEMENT BINDING PROTEIN 4 328 IPR045260 GO:0005085
Cma04g00028 341 PANTHER SEC12P-LIKE 2 PROTEIN-RELATED 4 328 - -
Cma04g00028 341 SUPERFAMILY WD40 repeat-like 38 297 IPR036322 GO:0005515
Cma04g00028 341 SMART WD40_4 128 164 IPR001680 GO:0005515
Cma04g00028 341 SMART WD40_4 258 298 IPR001680 GO:0005515
Cma04g00028 341 SMART WD40_4 216 255 IPR001680 GO:0005515
Cma04g00028 341 SMART WD40_4 86 124 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00028 K14003 PREB, SEC12; prolactin regulatory element-binding protein - csv:101207827 533.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00028 Cma-Chr4:133752 Cma04g01876 Cma-Chr4:9560360 3.48E-135 dispersed
Cma04g00028 Cma-Chr4:133752 Cma03g00866 Cma-Chr3:6430815 4.28E-06 transposed
Cma04g00028 Cma-Chr4:133752 Cma04g01460 Cma-Chr4:7424373 5.96E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g430 . . . . . . . . . . . Cma04g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01025 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007496 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 2 1 3 2 1 1 3 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00028 Cma_Chr04 FPKM 3.062312 3.803144 4.106347 4.350893 5.859331 6.531716 7.522093 7.33519 7.211399 8.239262