Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00029 ATGGATGACGAGGTGGTCCAGCGGGTTCTCCAAGAAGGCAGAGATTTCTACCAAAAACAGCCCTCCACTTCCACCTCTTCCTCCTCCATCCTTCAATCACTGCCGCTACATGTGTCTTTCGATCATGGATATTATCTATTAGTAAAATCCATCCAAGAACTTAGAGAGAAAAAAGATGGACTTGTAACAGTTGGAATTGGTGGTCCAAGCGGTTCTGGTAAAACCAGCTTAGCAGAGAAAGTGGCATCTGTAATTGGCTGTAATGTTATATCGATGGAAAACTATCGTGATGGAGTTGACGAGGGGAATGATTTGGATTCTATAGACTTTGATCTTCTAGTGCAGAATCTTGAGGATTTGACAAATGGAAAAGACACCATGATCCCAGTTTTTGACTTTCATCTGAAGAAACGGGTCAGTTCAAAAGTAATAAAGAGTGCTTCGTCTGGGGTGGTAATCATCGATGGAACCTACGCATTACATGCAAAATTACGTTCTTTGCTAGATATTCGGGTTGCAGTGGTTGGCGGAGTTCATTTTAACCTTCTCTTCAAAGTTCGGCATGATATTGGAGATTCCTGTTCATTGGATTACCTTATTGATAGCATATTTCCTTTGTTTAGAAAGCACATAGAGCCAGACCTCCATCATGCCCAGATAAGAATTAACAACAGCTTTGTCTCATCATTTAGGGAAGCAATATACAAGCTGAAATGTAGAAGTGAGTTCCCAGATGTAGATTCTGCTCATCTTTTTAAAGGAAATCAACCGCATACGGACAATTTTATTGAGATGTATCTTAGGCCTCCATCTGCAAGTGAAGAAGCGCGCATAAATGACTGGATTAAAGTGCGACAATCTGGTATTAAGTACTATCTATCACTTGGTGATCAGAGGATAGTCGACAAAAATTTTATCATCAGACCTAAAGCTGAATTTGAGGTTGGACGGATGACTTTAGGTGGTTTGCTGGACTTGGGGTATACAGTAGTTGTTGGTTATAAAAGGGCTTCTATATCAGTAAATAAGGGCAATGTTTCTGTGTCGCTTGAAACAATTGATTCTCTTGGTGAGACATTCATGGTGCTGAGAAGCTCAAATCGAAAAACAGTCGGAGAAGAAGTGTTGAGGATGGGTATCAGAGGATCTTGGATTACAAAGTCATACCTGGAGATGATTCTTGAAAGAAAAGGTGTACCACGATTAAATACCCCTCCACTTTTACCAAATACATCTGTGGTTAATAACCAAGAAAAGGTTGTCATTGCTCCAAGGCCTATCCGTGTTACTTCAAACCCTGTTTCTCGACTTGAGGATCTTTCTCAGCCATGGACTCGATCTCCAACAAAATCTCAAATGGAACCAGTAGTTGCAACATGGAAATTTATTATTCCTCCCCGATCTGAAAGTTTAATGACCGATTACTCTCATGAAGCAACCACAGATCCTGCCTCTTTCAGGGACTATATGAGGCTTGCTCCAATGCCTGATTCATGTGACCTGGATAGAGGTTTGCTTTTAGCTGTTCAAGCGATTCAGGCGTTATTGGAGAATAAAGATCTTCCTGTTATTGTTGGAATTGGTGGTCCAAGTGGGTCAGGGAAGACTAGTTTAGCTCATAAAATGGCTAATATTGTTGGATGTGAAGTAATTTCTCTCGAGAGTTATTACAAATCGGAGCAAGTGAAGGATTTCAAGTATGATGATTTCAGCACGCTTGATCTGCCGCTGCTGTCCAAGAATATTGATGACATGAGAAATGGTCGAAGAACAAAAGTACCGGTATTTGACATGGAAACTGGTGCTCGAAGTGGTTTTAAGGATCTTGAAGTTTCTGAAGATTGTGGAGTGATCATTTTTGAAGGAGTATATGCTTTACATCCGGACATCAGGAAATCACTTGACCTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATCTGATTTCTCGAGTCCAAAGAGATAAATGCAAAGCAGGGTGTTTCATGTCACAAAATGACATAATGATGACAGTTTTCCCTATGTTCCAGCAGCACATTGAACCACATCTTGTTCACGCGCATCTCAAAATACGGAATGACTTTGATCCTGTGCTTTCTCCTGAGAGCTCACTATTTGTGCTGAAGAGTAACAAGCAGGTGGCTTATCAAGATATACTCAAAATTCTTGAATCATCAAAGGTCTGTAGTTCTATACAAAATTTCATCGACATATATTTGAGGCTTCCAGGAATTCCTACAAATGGGCAGTTAACAGAGAGTGATTGTATACGAGTTAGAATATGTGAAGGCCGATTTGCATTGTTGATACGGGAGCCTATAAGAGAGGGGAATTTCATCATTCAACCGAAGGTGGACTTTGACATTAGTATTAGTACAGTTGCTGGCCTTCTTAATCTGGGGTATCAAGCCATGGCTTATATTGAAGCATCTGCGTACATATACCAAGATGGGAAGATTCTAGTTGAGGTTGACCATCTACAAGATGCTCCTTGTCCTTACCTACAAATAAAAGGGGTGGATAAAGAGGCTGTTGCGGCAGCTGGTTCCATGCTTGAATTGAATGATTCATATACTACAAAGAGCTATCTTCAAATAATTTTGGAAAGTTTGCCAGAAAATAGGAGTTCTGGCCTAATCCATAATCATCAAGCTGCAAGGCTGCAAGAACTTGTGGAATTTATTCAATCTCAGGGAAGTAGTACAGCTTCAGAGTCATCCCCTAGTAGGGAGGCATCATCTCCACTGGAAGGGATCATCGAAGACATGCAGTCCAGAATCAGAAGGCTTGAACGTTGGCTCGCAATTAATACGGTTTTGTGGACCTTTTTTGTTTCGGCCCTTGTTGGTTATTCACTCTACCGGAGTAAGCGTCAGTGA 2880 40.97 MDDEVVQRVLQEGRDFYQKQPSTSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLAEKVASVIGCNVISMENYRDGVDEGNDLDSIDFDLLVQNLEDLTNGKDTMIPVFDFHLKKRVSSKVIKSASSGVVIIDGTYALHAKLRSLLDIRVAVVGGVHFNLLFKVRHDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRSEFPDVDSAHLFKGNQPHTDNFIEMYLRPPSASEEARINDWIKVRQSGIKYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYTVVVGYKRASISVNKGNVSVSLETIDSLGETFMVLRSSNRKTVGEEVLRMGIRGSWITKSYLEMILERKGVPRLNTPPLLPNTSVVNNQEKVVIAPRPIRVTSNPVSRLEDLSQPWTRSPTKSQMEPVVATWKFIIPPRSESLMTDYSHEATTDPASFRDYMRLAPMPDSCDLDRGLLLAVQAIQALLENKDLPVIVGIGGPSGSGKTSLAHKMANIVGCEVISLESYYKSEQVKDFKYDDFSTLDLPLLSKNIDDMRNGRRTKVPVFDMETGARSGFKDLEVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKCKAGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILESSKVCSSIQNFIDIYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAMAYIEASAYIYQDGKILVEVDHLQDAPCPYLQIKGVDKEAVAAAGSMLELNDSYTTKSYLQIILESLPENRSSGLIHNHQAARLQELVEFIQSQGSSTASESSPSREASSPLEGIIEDMQSRIRRLERWLAINTVLWTFFVSALVGYSLYRSKRQ 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 145507 161885 - CmaCh04G000290.1 Cma04g00029 291110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00029 959 Pfam Phosphoribulokinase / Uridine kinase family 524 691 IPR006083 GO:0005524|GO:0016301
Cma04g00029 959 Pfam Phosphoribulokinase / Uridine kinase family 64 222 IPR006083 GO:0005524|GO:0016301
Cma04g00029 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 694 IPR027417 -
Cma04g00029 959 Gene3D - 712 871 - -
Cma04g00029 959 PANTHER URIDINE KINASE 611 950 - -
Cma04g00029 959 PANTHER URIDINE KINASE 500 611 - -
Cma04g00029 959 PANTHER URIDINE KINASE 2 422 - -
Cma04g00029 959 CDD UMPK_like 524 694 - -
Cma04g00029 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 611 950 - -
Cma04g00029 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 500 611 - -
Cma04g00029 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 422 - -
Cma04g00029 959 SUPERFAMILY CYTH-like phosphatases 722 866 IPR033469 -
Cma04g00029 959 PRINTS Uridine kinase signature 522 539 - -
Cma04g00029 959 PRINTS Uridine kinase signature 645 655 - -
Cma04g00029 959 PRINTS Uridine kinase signature 549 560 - -
Cma04g00029 959 CDD UMPK_like 63 225 - -
Cma04g00029 959 SMART AAA_5 521 674 IPR003593 -
Cma04g00029 959 SMART AAA_5 60 210 IPR003593 -
Cma04g00029 959 Gene3D - 521 711 IPR027417 -
Cma04g00029 959 Gene3D - 62 240 IPR027417 -
Cma04g00029 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 227 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00029 - - - csv:101220584 1756.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00029 Cma-Chr4:145507 Cma10g00269 Cma-Chr10:1195804 2.00E-59 dispersed
Cma04g00029 Cma-Chr4:145507 Cma11g00239 Cma-Chr11:1218814 4.23E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g429 . . . . . Bpe10g00920 . . . . . Cma04g00029 . . . . . . . . . . . . . . . . . . . Cone13ag0762 Cone19ag0766 . . . . . Cme10g01474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00029 Cma_Chr04 FPKM 8.203698 8.868367 8.677445 9.910079 5.991727 5.694144 7.024796 11.310131 10.143156 11.666505