Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00034 ATGAAACTTACGGTTTTGAGGTACTCTCCATTTTTCTTGGTCTTGTTGGTTTGTGTACTGCCTCTGGTTCGAGCTGGAGATGCAGAAGCTCTGTTGGCATTGAAAGCATCTCTCGACCCTGGGAACTCGCTGCCATGGCGAGGAAGTTCCATCTGCAGCTGGCAAGGCGTAAAAGAGTGCACAAATGGACGGGTAACTAAGCTCGTTTTGGAACATCTAAATCTCTCTGGTGTTCTTAACGACAAAATTTTGAATCGTTTAGATCAGCTTCGTGTTCTTAGTTTCAAAGGAAATTCACTTTCCGGTCAAATCCCTGACCTTTCGGGTCTCGTTAATCTCAAATCCCTCTATCTAAGTGACAACAACTTGTCCGGCGAGTTTCCGAGCTCCATCTCCGACCTTCACCGCTTGAAGGTCGTCGTCGTTTCCGGTAACCAAATATCTGGCCCCATTCCAGACTCGCTGCTGAAACTCCGGCGTCTCTATGTTCTACACCTTCAGGACAACCAATTCAGTGGCTCCATCCCTCCTTTCAAGCAAACCAGTCTTCGATTCTTCAATGTCTCTAACAACCGACTCTCCGGCGACATCCCAGTAACCCCCACCTTGGTCCGCTTCAATGTGTCGTCATTTTCCGGCAACCTGGAACTTTGCGGAGAACAAATTCAGAAGCCCTGTGGAAATGTTGCCATTACGCCATCATCGAGTCCCTCTTATCCGCAAATCACTGGCTCAAGCTCGTCTTCAAGACGCACCAAATTGGTCAAGATAATAGCAGGAAGCGTTGGTGGGTTTGTCGGACTTCTATTGATCATTCTTCTACTGTTTATGATTTGCAAATGCAGGGAAAGAAAGAGTCTATCCGAGGTCAGAAACAAAGGAATCGACGACGAGGGAATGAGGATGGAGGAAGCATCTGGAATCTCCGCCGGCGGCAGAGGAGGTAATAATGGAGGAAAGCAAGGGGGATTTTCATGGGAAAGTGAAGGACTAGGAAGCCTAGTGTTCTGTGGAGCAGGGGATCAGAAAATGACTTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACTTTGGGCAGAGGGAGCATGGGAAGCACATACAAGGCTGTGATGGAATCTGGGTATATTGTTACAGTGAAACGGCTGAAGGATGCAAGGTACCCTCGAGCAGAGGAGTTCGGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACACCCCAACTTGGTCCCTCTCAGGGCCTATTTCCAGGCTAAGGAAGAACGCTTGCTCGTATATGATTATTTCCCTAATGGCAGTCTCTTCTCTCTCATCCACGGATCAAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTTAAAATAGCCGAAGACTTGGCCAATGGTTTGTTGTATATCCACCAGAACCCTGGCTTAACCCATGGAAACCTGAAATCCTCAAATGTACTACTAGGATCTGATTTCGAGTCATGTCTTACTGATTATGGACTTAACTTATTCCGAGATCCCGATTCACTTGAAGAATCTAGTGCAACTTCACTCTTTTACCGAGCTCCCGAATGCCGTGACGTCCGTAAGCCAACCACACAACAAGCCGACATCTATAGCTTTGGTGTTCTTCTGTTGGAGCTTCTAACAGGGAAAACACCATTTCAAGATCTAGTCCAAGAACATGGTTCTGACATTCCCAAGTGGGTTAATTCCGTTAGAGAAGAGGAGACAGAGTCTGGGGATGATCCTGCATCTGGGAATGAGGCATCGGAAGAGAAACTTCAAGCTCTTTTGAACATTGCAATGGCTTGTGTTTCGCTTATGCCACAAAACCGACCAATGATGAGGCAAGTTCTAAAGATGATAAGAGATACAAGAGCAGAGGCTCAAATCTCATCCAACAGTAGTGACCATTCACCAGGTAGCTGGTCTGATATTGTCCAGAGTTTGCCCAGGGATGAACATTTAGTTTCGTCAAAACAAGAAGCAGAGCTGGAGCGAGCTGATGCACTTGGTTCATCCTCGTCTTGCCGTTCATTTGATAGGAAATAA 2052 47.12 MKLTVLRYSPFFLVLLVCVLPLVRAGDAEALLALKASLDPGNSLPWRGSSICSWQGVKECTNGRVTKLVLEHLNLSGVLNDKILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSLYLSDNNLSGEFPSSISDLHRLKVVVVSGNQISGPIPDSLLKLRRLYVLHLQDNQFSGSIPPFKQTSLRFFNVSNNRLSGDIPVTPTLVRFNVSSFSGNLELCGEQIQKPCGNVAITPSSSPSYPQITGSSSSSRRTKLVKIIAGSVGGFVGLLLIILLLFMICKCRERKSLSEVRNKGIDDEGMRMEEASGISAGGRGGNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGSMGSTYKAVMESGYIVTVKRLKDARYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEESSATSLFYRAPECRDVRKPTTQQADIYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVNSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLMPQNRPMMRQVLKMIRDTRAEAQISSNSSDHSPGSWSDIVQSLPRDEHLVSSKQEAELERADALGSSSSCRSFDRK 683
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 196467 200395 - CmaCh04G000340.1 Cma04g00034 291115
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00034 683 Gene3D Phosphorylase Kinase; domain 1 336 428 - -
Cma04g00034 683 MobiDBLite consensus disorder prediction 629 646 - -
Cma04g00034 683 MobiDBLite consensus disorder prediction 568 589 - -
Cma04g00034 683 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Cma04g00034 683 SUPERFAMILY L domain-like 29 218 - -
Cma04g00034 683 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Cma04g00034 683 Gene3D Ribonuclease Inhibitor 181 229 IPR032675 -
Cma04g00034 683 MobiDBLite consensus disorder prediction 629 683 - -
Cma04g00034 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 648 - -
Cma04g00034 683 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 648 - -
Cma04g00034 683 ProSiteProfiles Protein kinase domain profile. 353 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00034 683 Gene3D Transferase(Phosphotransferase) domain 1 429 644 - -
Cma04g00034 683 SUPERFAMILY Protein kinase-like (PK-like) 357 633 IPR011009 -
Cma04g00034 683 Pfam Protein kinase domain 356 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00034 683 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00964 Cma-Chr3:6841292 Cma04g00034 Cma-Chr4:196467 6.16E-154 dispersed
Cma04g00034 Cma-Chr4:196467 Cma04g00985 Cma-Chr4:5060054 0 dispersed
Cma04g00034 Cma-Chr4:196467 Cma07g00691 Cma-Chr7:3037128 1.12E-161 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68451 PF00069 Pkinase 3.10E-36 CL0016 Cma PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00034 - - cmax:111483350 1290.4