Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00034 | ATGAAACTTACGGTTTTGAGGTACTCTCCATTTTTCTTGGTCTTGTTGGTTTGTGTACTGCCTCTGGTTCGAGCTGGAGATGCAGAAGCTCTGTTGGCATTGAAAGCATCTCTCGACCCTGGGAACTCGCTGCCATGGCGAGGAAGTTCCATCTGCAGCTGGCAAGGCGTAAAAGAGTGCACAAATGGACGGGTAACTAAGCTCGTTTTGGAACATCTAAATCTCTCTGGTGTTCTTAACGACAAAATTTTGAATCGTTTAGATCAGCTTCGTGTTCTTAGTTTCAAAGGAAATTCACTTTCCGGTCAAATCCCTGACCTTTCGGGTCTCGTTAATCTCAAATCCCTCTATCTAAGTGACAACAACTTGTCCGGCGAGTTTCCGAGCTCCATCTCCGACCTTCACCGCTTGAAGGTCGTCGTCGTTTCCGGTAACCAAATATCTGGCCCCATTCCAGACTCGCTGCTGAAACTCCGGCGTCTCTATGTTCTACACCTTCAGGACAACCAATTCAGTGGCTCCATCCCTCCTTTCAAGCAAACCAGTCTTCGATTCTTCAATGTCTCTAACAACCGACTCTCCGGCGACATCCCAGTAACCCCCACCTTGGTCCGCTTCAATGTGTCGTCATTTTCCGGCAACCTGGAACTTTGCGGAGAACAAATTCAGAAGCCCTGTGGAAATGTTGCCATTACGCCATCATCGAGTCCCTCTTATCCGCAAATCACTGGCTCAAGCTCGTCTTCAAGACGCACCAAATTGGTCAAGATAATAGCAGGAAGCGTTGGTGGGTTTGTCGGACTTCTATTGATCATTCTTCTACTGTTTATGATTTGCAAATGCAGGGAAAGAAAGAGTCTATCCGAGGTCAGAAACAAAGGAATCGACGACGAGGGAATGAGGATGGAGGAAGCATCTGGAATCTCCGCCGGCGGCAGAGGAGGTAATAATGGAGGAAAGCAAGGGGGATTTTCATGGGAAAGTGAAGGACTAGGAAGCCTAGTGTTCTGTGGAGCAGGGGATCAGAAAATGACTTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACTTTGGGCAGAGGGAGCATGGGAAGCACATACAAGGCTGTGATGGAATCTGGGTATATTGTTACAGTGAAACGGCTGAAGGATGCAAGGTACCCTCGAGCAGAGGAGTTCGGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACACCCCAACTTGGTCCCTCTCAGGGCCTATTTCCAGGCTAAGGAAGAACGCTTGCTCGTATATGATTATTTCCCTAATGGCAGTCTCTTCTCTCTCATCCACGGATCAAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTTAAAATAGCCGAAGACTTGGCCAATGGTTTGTTGTATATCCACCAGAACCCTGGCTTAACCCATGGAAACCTGAAATCCTCAAATGTACTACTAGGATCTGATTTCGAGTCATGTCTTACTGATTATGGACTTAACTTATTCCGAGATCCCGATTCACTTGAAGAATCTAGTGCAACTTCACTCTTTTACCGAGCTCCCGAATGCCGTGACGTCCGTAAGCCAACCACACAACAAGCCGACATCTATAGCTTTGGTGTTCTTCTGTTGGAGCTTCTAACAGGGAAAACACCATTTCAAGATCTAGTCCAAGAACATGGTTCTGACATTCCCAAGTGGGTTAATTCCGTTAGAGAAGAGGAGACAGAGTCTGGGGATGATCCTGCATCTGGGAATGAGGCATCGGAAGAGAAACTTCAAGCTCTTTTGAACATTGCAATGGCTTGTGTTTCGCTTATGCCACAAAACCGACCAATGATGAGGCAAGTTCTAAAGATGATAAGAGATACAAGAGCAGAGGCTCAAATCTCATCCAACAGTAGTGACCATTCACCAGGTAGCTGGTCTGATATTGTCCAGAGTTTGCCCAGGGATGAACATTTAGTTTCGTCAAAACAAGAAGCAGAGCTGGAGCGAGCTGATGCACTTGGTTCATCCTCGTCTTGCCGTTCATTTGATAGGAAATAA | 2052 | 47.12 | MKLTVLRYSPFFLVLLVCVLPLVRAGDAEALLALKASLDPGNSLPWRGSSICSWQGVKECTNGRVTKLVLEHLNLSGVLNDKILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSLYLSDNNLSGEFPSSISDLHRLKVVVVSGNQISGPIPDSLLKLRRLYVLHLQDNQFSGSIPPFKQTSLRFFNVSNNRLSGDIPVTPTLVRFNVSSFSGNLELCGEQIQKPCGNVAITPSSSPSYPQITGSSSSSRRTKLVKIIAGSVGGFVGLLLIILLLFMICKCRERKSLSEVRNKGIDDEGMRMEEASGISAGGRGGNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGSMGSTYKAVMESGYIVTVKRLKDARYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEESSATSLFYRAPECRDVRKPTTQQADIYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVNSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLMPQNRPMMRQVLKMIRDTRAEAQISSNSSDHSPGSWSDIVQSLPRDEHLVSSKQEAELERADALGSSSSCRSFDRK | 683 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 196467 | 200395 | - | CmaCh04G000340.1 | Cma04g00034 | 291115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00034 | 683 | Gene3D | Phosphorylase Kinase; domain 1 | 336 | 428 | - | - | |
Cma04g00034 | 683 | MobiDBLite | consensus disorder prediction | 629 | 646 | - | - | |
Cma04g00034 | 683 | MobiDBLite | consensus disorder prediction | 568 | 589 | - | - | |
Cma04g00034 | 683 | Pfam | Leucine rich repeat N-terminal domain | 26 | 57 | IPR013210 | - | |
Cma04g00034 | 683 | SUPERFAMILY | L domain-like | 29 | 218 | - | - | |
Cma04g00034 | 683 | Pfam | Leucine rich repeat | 112 | 171 | IPR001611 | GO:0005515 | |
Cma04g00034 | 683 | Gene3D | Ribonuclease Inhibitor | 181 | 229 | IPR032675 | - | |
Cma04g00034 | 683 | MobiDBLite | consensus disorder prediction | 629 | 683 | - | - | |
Cma04g00034 | 683 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 11 | 648 | - | - | |
Cma04g00034 | 683 | PANTHER | LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN | 11 | 648 | - | - | |
Cma04g00034 | 683 | ProSiteProfiles | Protein kinase domain profile. | 353 | 631 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g00034 | 683 | Gene3D | Transferase(Phosphotransferase) domain 1 | 429 | 644 | - | - | |
Cma04g00034 | 683 | SUPERFAMILY | Protein kinase-like (PK-like) | 357 | 633 | IPR011009 | - | |
Cma04g00034 | 683 | Pfam | Protein kinase domain | 356 | 620 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g00034 | 683 | Gene3D | Ribonuclease Inhibitor | 25 | 180 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00964 | Cma-Chr3:6841292 | Cma04g00034 | Cma-Chr4:196467 | 6.16E-154 | dispersed | |
Cma04g00034 | Cma-Chr4:196467 | Cma04g00985 | Cma-Chr4:5060054 | 0 | dispersed | |
Cma04g00034 | Cma-Chr4:196467 | Cma07g00691 | Cma-Chr7:3037128 | 1.12E-161 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68451 | PF00069 | Pkinase | 3.10E-36 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00034 | - | - | cmax:111483350 | 1290.4 |