Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00036 ATGGCAATGCCATCGGGAAATGTGGGTGTTTCCGATAAAGTTCCGTTTCAGAGCAGTGGCGGAGTTGCGGTGAGCGGTGGTGAGATCCATCAGCACCGCCCCCGCCCCTGGTATCCTGATGAGCGTGATGGGCTTATCTCATGGTTCCGAGGCGAATTTGCTGCTTCGAATGCGATCATTGATGCCCTTTGCCATCATTTGCGTGCTGTGGGAGAGCCTGGGGAATATGATGTTGTTATTGGGTGTATACAGCAACGGCGGTGCAATTGGACGCCGGTGCTTCATATGCAGCAGTACTTTTCAGTGGCAGAAGTGATGTTTGCACTTCAGCAGGTCACCTCTAGAAGGCAGCAGAGGTTTGTTGATCCTATGAAAGTGGGGTCGAAGTTGTTTAGGAGACCTGGGCCAGCATTTAAGCAGCAGCATCAGCAGGATCAGCAGCATGGCCATCGCCTTGAAGCCACAGTCAAGGAAGAGATGGTCACTTGTGCGGAGTCTTGTAATGGTGGGAATTCTTCAAGTTTTGTAGGCTCTAGGAAGGTTGAGCAAGTAAGTAATACATGCGAGGAAAGTAATGCAACGGGGGAGGATGGTAAATTGAATGATAAGGATTCAGGGTCAGCTGAGGACATAAAAGACACTCATGGGAAGGACCAAAGTAATAGCAAACCCAAGTGTGCAGAAAACTTAGAAGACAATGCAAGCAATAAAGAATCTCAAGTTGAACCTACTGATGATGGATGTTCTTCAAGTCAAAGAGATAAGGGGCTGCAGTCTGTTCAAAGCCGGAACGCAAGGCAGTATGCTGCCACAGCCCCAAGAACCTTTGCTGCCAATGAGATATTTGATGGAAAGACGGTTAATGTGATGGATGGATTGAAATTGTATGAAGAATTATTGGATGATATTGAGGTTTCAAAGCTTCTTTCATTGGTGAATGATTTGAGGGCTTCGGGAAAGAGAGGGCAACTCCAAGGTCCGACATATATTGTCTCGAAAAGACCGATGAAGGGTCATGGGAGAGAGATGATCCAGCTAGGCTTCCCGATTGCAGATGCAGCTCATGATGACGCCAATTCTTCAGGGCTCTCAAAAGATAGAAGAATAGAATCCATCCCCTCATTGCTTCAAGATCTCATTGATTGCTTGGTTTGGGAGCAAGTGATGACAGTGAAACCCGATTCCTGCATCATTGACTTTTATAACGAGGGTGATCATTCTCAGCCTCATGTCTGGCCACCATGGTTTGGGAGGCCTGTTGGTGTCCTCCTTTTAACTGAATGTGAAATGAGCTTTGGTAGAGTACTTGGTTCAGACCATTCTGGCAATTATAGAGGGGCTAAGACATTGTCTCTTGCACCGGGGAGCCTCCTTGTGGTGCAAGGAAAATCTGCAGATTTTGCTAAGCATGCAATTCCTGCTATGCGCAAGCAACGGATACTTGTTACCTTGACCAAATCACAACCAAAAAGAGCAGGACCAGCTGATGGGCAACGCACATCTTTGAATTTAGGTTCATATTCCAGTTGGGGCCCTCCATCAGCTAGATCACCCAATGCTCGTCCTTGCCCGGGACAGAAGCATTACCCTATGGGTCCATCGACAGGCGTTCTACCTGTGCCACCCATTCGTCCTCAATTGCCACCACAAAATGGCATCCCACCAATAATGGTGGCTCCTGTAGCACCACCACCTATGCCTTTCCCTCCTTCCGTGCCAATTCCAACGGGTCCACCTGCATGGCCTGCTGCTCATCCAAGGCATCCTCCGCCACGTCTCCCTGTTCCTGGCACTGGAGTATTCCTTCCTCCAGGTGCTTCCAGTGCTCCATCTCCTCAACAGATGCCAAACTCCGCAGTGGAAACGAGTTCCCTTGCAGAAAAGGAAAATGGTCCGACGGAATCTGATCACAATGGAGGTGCTTCTCCAGGGGAAAAATCTGAAGCAAAACCTCAAAGACAAGAATGCAATGGAAGCATGGATGGAAGTGGGAGTTGTAAGAAGACGGAGGAAGAACAACCAAAGCAGCAGCAGGAGGAGGAGGAGAAAAGTGAGAATGTGGAGGCCCAAAATGCAGGAGTTAGTCACAAGCAAAATGTAGATAGCGGCAACATTCAAAGACTGATACTACCATCAAACTGCTACTACCATCAAACTGCTACTACCATCAAACTGCTACTACCATCAAGGAGAACAAGGGGAGTTCCCTTTCAAAATCCTTTACTTCATTCCTTTTTTGTGTTGTCCAAAACAATTCTTGGTTAG 2265 47.77 MAMPSGNVGVSDKVPFQSSGGVAVSGGEIHQHRPRPWYPDERDGLISWFRGEFAASNAIIDALCHHLRAVGEPGEYDVVIGCIQQRRCNWTPVLHMQQYFSVAEVMFALQQVTSRRQQRFVDPMKVGSKLFRRPGPAFKQQHQQDQQHGHRLEATVKEEMVTCAESCNGGNSSSFVGSRKVEQVSNTCEESNATGEDGKLNDKDSGSAEDIKDTHGKDQSNSKPKCAENLEDNASNKESQVEPTDDGCSSSQRDKGLQSVQSRNARQYAATAPRTFAANEIFDGKTVNVMDGLKLYEELLDDIEVSKLLSLVNDLRASGKRGQLQGPTYIVSKRPMKGHGREMIQLGFPIADAAHDDANSSGLSKDRRIESIPSLLQDLIDCLVWEQVMTVKPDSCIIDFYNEGDHSQPHVWPPWFGRPVGVLLLTECEMSFGRVLGSDHSGNYRGAKTLSLAPGSLLVVQGKSADFAKHAIPAMRKQRILVTLTKSQPKRAGPADGQRTSLNLGSYSSWGPPSARSPNARPCPGQKHYPMGPSTGVLPVPPIRPQLPPQNGIPPIMVAPVAPPPMPFPPSVPIPTGPPAWPAAHPRHPPPRLPVPGTGVFLPPGASSAPSPQQMPNSAVETSSLAEKENGPTESDHNGGASPGEKSEAKPQRQECNGSMDGSGSCKKTEEEQPKQQQEEEEKSENVEAQNAGVSHKQNVDSGNIQRLILPSNCYYHQTATTIKLLLPSRRTRGVPFQNPLLHSFFVLSKTILG 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 202968 207520 + CmaCh04G000360.1 Cma04g00036 291117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00036 754 MobiDBLite consensus disorder prediction 665 687 - -
Cma04g00036 754 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 672 - -
Cma04g00036 754 MobiDBLite consensus disorder prediction 186 269 - -
Cma04g00036 754 SUPERFAMILY Clavaminate synthase-like 282 484 - -
Cma04g00036 754 MobiDBLite consensus disorder prediction 226 269 - -
Cma04g00036 754 MobiDBLite consensus disorder prediction 487 551 - -
Cma04g00036 754 Gene3D - 276 492 IPR037151 -
Cma04g00036 754 MobiDBLite consensus disorder prediction 607 629 - -
Cma04g00036 754 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 1 672 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cma04g00036 754 MobiDBLite consensus disorder prediction 579 699 - -
Cma04g00036 754 MobiDBLite consensus disorder prediction 535 551 - -
Cma04g00036 754 MobiDBLite consensus disorder prediction 579 598 - -
Cma04g00036 754 MobiDBLite consensus disorder prediction 195 225 - -
Cma04g00036 754 MobiDBLite consensus disorder prediction 499 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00036 - - - cpep:111785549 1055.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00036 Cma-Chr4:202968 Cma17g01156 Cma-Chr17:8027513 2.72E-49 dispersed
Cma04g00036 Cma-Chr4:202968 Cma04g00989 Cma-Chr4:5095834 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g543 . . . . . Bpe10g01011 . Bma15g00018 . . . Cma04g00036 . Car04g00042 . . . . . . . . . . . . . . . . . . . Cone6ag0337 Cone9ag0371 . . . . Blo06g01038 Blo11g00962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005898 1 2 2 1 1 1 2 1 1 0 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00036 Cma_Chr04 FPKM 12.335982 15.37696 7.188725 7.888301 72.937737 73.172668 67.679787 20.802561 21.917843 20.630421