Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00039 ATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCCGTACCTGGCCTCACTTCATTCTCATCATCACCACTTCCTCCATCTGCGGTGCGAGATTTGGACATGAACAGAGCGCCAGATGAAGAGGAATGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCCCATCTTCTTGAACAGAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGAGTCTTGCGGAAGTGTTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTACTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCCACGGTGATTTCTCCTCACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAA 591 52.12 MAVLPTNSSRLDLTISVPGLTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKESLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTTLDKTRIVV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 215669 217930 - CmaCh04G000390.1 Cma04g00039 291120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00039 196 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Cma04g00039 196 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Cma04g00039 196 PANTHER - 1 191 - -
Cma04g00039 196 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Cma04g00039 196 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Cma04g00039 196 Gene3D - 57 127 - -
Cma04g00039 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 191 - -
Cma04g00039 196 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
Cma04g00039 196 SMART HOX_1 63 125 IPR001356 GO:0003677
Cma04g00039 196 CDD homeodomain 64 122 IPR001356 GO:0003677
Cma04g00039 196 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Cma04g00039 196 Coils Coil 134 157 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00039 Cma04g02089 CCT
Cma04g00039 Cma15g00941 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00039 Cma-Chr4:215669 Cma15g00941 Cma-Chr15:4997473 3.14E-56 dispersed
Cma04g00039 Cma-Chr4:215669 Cma04g02089 Cma-Chr4:14499939 1.42E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34732 PF00046 Homeodomain 1.10E-16 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00039 K09338 - csv:101222713 345.125