Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00042 ATGGTTGACAAGGAATTTTTCACCGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTTATAGGAAAAGGGAGCTACGGGGTTGTTGCATCTGCCATAGACACTCACTCTGGCGAGAAAGTTGCCATCAAGAAGATAAATAATGTCTTCGAGCATGTTTCGGATGCTACACGGATTCTTAGAGAAATTAAGCTCCTCCGTTTTCTCCGGCATCCTGATATTGTTGACATAAAACATATAATACTCCCTCCTTGCAGAAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAATCTGACCTTCATCATGTACTCAAAGCTAATGATGATCTCACCCCTCAACATCATCAATTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCACATGTGTTCCATAGAGATTTGAAGCCAAAGAATATACTTGCCAATGCAGACTGCAAACTGAAGATCTGTGACTTTGGGCTTGCTCGTGCATCTTTCACTGATGCCCCATCTGCTATCTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGCTCCTTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTCGCTGAAATGTTGGCAGGCAAGCCATTGTTTCCAGGGAATAGTGTTGTGCATGAGCTGGATCTAATAACTGATTTACTTGGTACTCCTTCGGCTGAATGCATTGCTAAGATTCGTAATGAAAAGGCTAAAAGATACTTGAATAGCATGAAAAAAAAGCACCCTGTTCCTCTGTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCATTTACTTGAGCGTCTACTTGCATTTGATCCGGAGGATCGTCCTTCTGCTGAGGAGGCATTAGCTGATCCATATTTCCATGGGCTTGCAAATGTGGAGGATGAACCATCGAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTAACCAAAAATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCATCCTCAAATGCTACAGGAATACCTTCAGGGTTCTGAGAGTCACTTCTTGTATCCCAGTGGAATCGATCAATTCAAGCGTCAATTTGATCATCTGGAGGAACACTCTGGTAAAGGTGAGAAAAGCAGTCCGCTCCTGAGGAAGTATGTCTCCTTGCCTAGGGAGCGAATCTGTACACCGAGAGATGAAGATGACGATAATTGTAAAACAGACCAGAATGCAACTTCAGCTGAACCTGCAGCGCTTCAAAGCACTCCTGGACCTGGTTATTCATTAACTGCTCTGAATGGTTCTGTTCAAGTAGACTGCAGCAATTACAACCTGTTGAGGAGTGCAAGTATTAGTTGCTCAAAATGGGTGGATTAA 1416 41.45 MVDKEFFTEYGEATQYEIEEVIGKGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIILPPCRREFKDLYIVFELMESDLHHVLKANDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFTDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGNSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLNSMKKKHPVPLSRKFPNADPLALHLLERLLAFDPEDRPSAEEALADPYFHGLANVEDEPSRQPISKLEFEFERRKLTKNDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDQFKRQFDHLEEHSGKGEKSSPLLRKYVSLPRERICTPRDEDDDNCKTDQNATSAEPAALQSTPGPGYSLTALNGSVQVDCSNYNLLRSASISCSKWVD 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 221872 224635 + CmaCh04G000420.1 Cma04g00042 291123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00042 471 ProSiteProfiles Protein kinase domain profile. 16 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00042 471 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524
Cma04g00042 471 SUPERFAMILY Protein kinase-like (PK-like) 13 313 IPR011009 -
Cma04g00042 471 CDD STKc_TDY_MAPK 15 352 - -
Cma04g00042 471 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 4 432 - -
Cma04g00042 471 Pfam Protein kinase domain 16 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00042 471 Gene3D Transferase(Phosphotransferase) domain 1 102 330 - -
Cma04g00042 471 MobiDBLite consensus disorder prediction 422 438 - -
Cma04g00042 471 Gene3D Phosphorylase Kinase; domain 1 32 353 - -
Cma04g00042 471 SMART serkin_6 16 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00042 471 ProSitePatterns MAP kinase signature. 51 154 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma04g00042 471 MobiDBLite consensus disorder prediction 408 438 - -
Cma04g00042 471 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 4 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00042 Cma-Chr4:221872 Cma11g00304 Cma-Chr11:1510304 0 dispersed
Cma04g00042 Cma-Chr4:221872 Cma04g00992 Cma-Chr4:5119035 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68452 PF00069 Pkinase 7.20E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00042 - - csv:101204645 817.764