Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00046 ATGCTTGCAGCTTCAGCTGCTGCTGTGGATCAACAGACCTACATTGTTCACATGGACACCACCAAGATGGTGGCCACCACCAGCCCTGAACAATGGTACTCAGCCATGATTCATTCAGTCAATAAAATCTCATCTCTACACCAAGATGAAGAAGAAGCGTCAAATGCTGCTGAGATTCTCTACGTCTACAAAACTGCTATTTCAGGTTTTGCTGCCAAACTCACCACCAAAAAGCTTCATTCTTTAAGTAAGATCCCAGGCTTTCTGGCCGCCACTCCTGATGAACTACTACAGCTACACACCACCCACTCCCCTCAGTTTCTGGGCCTACACAGAGAGCATGGCCTTTGGAATTCTTCAAACTCAGCTTCTGATATAATTATTGGTTTGATTGATTCTGGCATTTGGCCTGAGCATATAAGTTTTCAGGACAAGGGTCTGCCCCCAGTGCCTAAAAAATGGAAAGGCGCTTGTGAAGCAGGCCCAAAGTTCTCACCTTCAAATTGTAACAAAAAGCTCGTTGGAGCAAGAGCCTATATTGATGGCTACGAGGCCATTGTCGGTCGATTGAACGTAACGGGAACGTTTCGATCGCCTCGAGACTCGAATGGGCATGGCACACACACAGCGTCGACTGCTGCTGGAAATATTGTGAACAAAGCAAGCCTCTATAGCCAAGGCAAGGGGGTAGCCACTGGCATCAGTTTCACTTCAAGGATCGCAGCGTACAAAGCATGTTGGCCAATGGGGTGTGCCAATGCCGATATTTTGGCAGCCATGGACCGTGCAGTCGCTGATGGAGTTGACATTTTATCGCTCTCTTTAGGCGGTGGTGTTACTGCTTTTTACAAAGACAATATCGCCATAGCTGCATTTGGTGCTGTTCAAAATGGAGTTTTTGTGTCATGTTCAGCTGGTAATTTTGGCTCATTATTTCGCTCAGCTGTAAGCAATGCAGCGCCATGGATCATGACAGTCGCTGCTAGCTACACTGATAGAACATTCCCAACCACTGTAAAGCTTGGAAATGGACAAGTTTTCGAAGGCTCTTCTTTGTACTCTGGACAGAACACAGCTGAACTCCCACTTGTTTATAACAACACTGTAGGTGGCCAAGAAGCAAATCTTTGCACGCCTGGTTCACTTGTCCCAGCAATGGTGAAGGGCAAAATTGTGGTGTGTGGACGAGGCAAAAACCCGAGAGTTGCCAAAGGAGAGCAGGTCAAATTAGCAGGAGGAGCTGGGATGATTCTGATCAACACACAACTTGATGGCGAGGAGCTTTTTGCAGAGCCTCATGTTCTCCCAGCAACTTCTCTCGGAGCTTCAGCTACCAAAGCCATGTTGGACTATATAGCTTCCTCCAAGAATCAACCAACAGCTTCCATCGGGTTCCAGGGGACTAAATATGGAAGCAGAGCACCTAAAGTGGCTGCCTTTTCTTCTCGAGGGCCGAGCTTAATTGGACCGGATGTTATAAAGCCAGACGTAACTGCACCTGGTGTTAACATATTAGCTGCTTGGCCACCCATTGTGAGCCCAAGTGAGCTTGAGTTTGATAAAAGAAGAGTGTTGTTCAATATCATTTCAGGGACTTCTATGTCTTGCCCTCATGTTAGCGGCTTAGCTGCATTAATCAAATCGGCACACAACAACTGGTCGCCTGCTGCCATTAAATCTGCGCTCATGACAACAGCTTACACTACTGACAACAAAATGAGTCCCATTTCAGATGTCAGCCACCCCAACGGCGAACCGGCGGATCCATTTGCGATTGGCTCCGGCCATGTCGATCCCGAGAAAGCTTCCGATCCCGGACTCGTCTACGATATCGCACCCGGAGACTACCTAAACTACTTATGTAGCTTGAACTATAGTTCAACACAAATTGGTCTACTTTCAAAAGGGAATTTCAGTTGCCCATCAAAAAGAGAAGTTGTTGAGCCAGGGGACTTGAACTACCCTTCATTCTCAGTGATTATGAAGGCCAAAAATGTTAGCGTTACATTGAAAAGAACAGTCACAAACGTTGGTTACCCAATGAGTGATTACAGTGTCCAAATCAACAATCCAAAAGGAGTGGAAATGATTGTGAAGCCGAAGAGGTTGAGTTTTGAGAGATCAGGAGAGAAGTTGAGTTACAAAGTGAGTTTTGTTGCATTGGAAGAAGCAGAAGATTTGGGTGAGTTTTCGTTTGGATCTGTTGTTTGGGTGTCGGGGAAGTATCGTGTAAGAAGTCCTGTAGCAGGGGAGGGGTATGAAGAGTGCAACAAGGATAATTGGTTTGGTGATTTTGCTCGTGTATGCAGCCACACAATGGGGTTTAGGGAAGTATGCCTGTTTTTGTCAATATTCCTTGCAACCTCGGCTGCTGCTGTGGATCAACAATCCTACATCATTCACATGGACACCACCAAGATGGCCGCCCCCAGCCCCGAACAATGGTACACAGCCTTGATTGATTCTATCAATAAAATCTCATCTTTAGACGACCAAGAAGAAGCATCAAGTGCTGCCCAGATTCTTTACGTCTACAAAACTGCTATTTCAGGTTTTGCTGCCAAGCTCTCCACCAAAAAGCTTCATTCTTTAAGCAAGACTCCTGGCTTTCTGGCAGCCACTCCTAATGAACTACTACAGCTTCACACTACCCACTCCCCTCAGTTTCTGGGCCTACAAAGAGAGCATGGCCTTTGGAATTCTTCAAACTTAGCTTCTGATATAGTTATTGGTTTGCTTGACACTGGAATTTGGCCTGAGCATATAAGCTTTCAGGACAAGGGTCTTCCCCCAGTGCCTAAAAAATGGAAGGGCACTTGTCAAGCAGGCCAAAAGTTTTCACCTTCCAATTGCAACAGGAAACTCATTGGCGCAACAGCCTACATTAAAGGCTACGAAGCAATCGTCGGTCGATTGAACGCAACGGGAACGTTCCGATCGCCCCGAGACTCGGATGGGCACGGCACACACACAGCATCCACTGCTGCTGGAAATATTGTCAACAAAGCTAGCTTTTTTAACCAAGCCATGGGAGTAGCCACTGGAATGAGGTTCACTTCAAGGATTGCAGCGTACAAAGTATGCTGGACGGAGGGGTGCGCCAACGCCGACATTTTGGCAGCCATAGACCGCGCAGTTGCCGATGGCGTTGATGTTCTGTCCCTCTCTTTGGGCGGCAGTGCTAGTGCCTTTTACAAAGATGATATTGCCATAGCTACATTTGGTGCTGTTCGAAATGGGGTTTTCGTGTCATGTTCAGCTGGTAATTCTGGCCCATCTAGCTCAACGGTTAGTAATATAGCCCCATGGATCATGACAGTCGCTGCCAGCTACACCGATAGAACCTTCCCAGCCACTGTTAAACTTGGAAATGGACAAGTTTTTGAAGGTTCTTCTTTGTATTCTGGGAACAGCATAGGTCAACTCCCACTTGTTTACAACAATACTGCTGGAGGAGAAGAAGCAAATGTTTGTACAGCTGGTTCACTCGTCCCATCACTGGTGAAGGGTAAAATTGTGGTATGTGAAAGAGGAACAAACTCGAGAACAGCGAAAGGAGAGCAAGTGAAGTTAGCAGGCGGTGCTGGAATGATTCTGATCAACACACAACTCGAAGGTGAGGAGCTTTTTGCTGACCCTCATGTGTTACCTGCCGCTAATCTTGGAGCTTCAGCTGGCCAAGCCATCATCCGCTACATATCTTCCTCCAAGCATCAACCAAAAGCTTTGATCGCATTTGAAGGGACCAAATTCGGAAACCGAGCGCCGAGAGTGGCTGCGTTCTCTTCTCGAGGGCCGAGCTTAATTGCACCGGATGTCATAAAGCCAGACGTAACTGCACCTGGGGTTAATATATTAGCTGCTTGGCCACTCATTGCCAGCCCAAGTGAGCTGGAGTCTGATAAGAGGAGAGTGTTGTTCAATATCATTTCAGGGACTTCTATGTCTTGCCCCCATGTTAGTGGCTTAGCTGCACTGCTTAAATCAGCGCACAAGGATTGGTCACCTGCAGCCATCAAATCTGCACTCATGACCACAGCGTACACTAATGACAACAGAATGAGTCCCATTTCGGACGTTGGGTCTGAGAGCGGCAAACCCGCAAACCCTTTTGCATTCGGTTCTGGTCATGTGGATCCGGAGAAAGCCTCTGATCCAGGGCTGATCTATGATATCACGCCCCAAGACTACCTAAACTACTTCTGTAGCTTGAACTATAATTCAACACAAATTGGCTTAGTTTCAAGAGGGAACTTCACATGTCCATCAAAGAGAAGAGTTGGTCAGCCAGGGAACTTGAACTACCCTTCCTTCTCCGTGTTCATGAAGAAGAAAGCCAAGAATGTTAGTGTTACGTTGAAGAGAACGGTCACAAATGTTGGTCGCCCAAGAAGTGATTACACTGTCAAAATCAAGAATCCAAAGGGAATAGGGATTCGTGTGGAGCCTGAGAAGTTGAGTTTTAGGAGATACGGACAGAAGCTGAGTTACCAAGTGAGCTTCGTTGCATTGGGTAAAAGAGAAGGTTTGGGTGGATTTTCTTTTGGATCTCTTGTTTGGGTGTCGGGAAAATATGGTGTGAGAAGTCCTATAGCCGTAACTTGGAAGTAG 4611 46.76 MLAASAAAVDQQTYIVHMDTTKMVATTSPEQWYSAMIHSVNKISSLHQDEEEASNAAEILYVYKTAISGFAAKLTTKKLHSLSKIPGFLAATPDELLQLHTTHSPQFLGLHREHGLWNSSNSASDIIIGLIDSGIWPEHISFQDKGLPPVPKKWKGACEAGPKFSPSNCNKKLVGARAYIDGYEAIVGRLNVTGTFRSPRDSNGHGTHTASTAAGNIVNKASLYSQGKGVATGISFTSRIAAYKACWPMGCANADILAAMDRAVADGVDILSLSLGGGVTAFYKDNIAIAAFGAVQNGVFVSCSAGNFGSLFRSAVSNAAPWIMTVAASYTDRTFPTTVKLGNGQVFEGSSLYSGQNTAELPLVYNNTVGGQEANLCTPGSLVPAMVKGKIVVCGRGKNPRVAKGEQVKLAGGAGMILINTQLDGEELFAEPHVLPATSLGASATKAMLDYIASSKNQPTASIGFQGTKYGSRAPKVAAFSSRGPSLIGPDVIKPDVTAPGVNILAAWPPIVSPSELEFDKRRVLFNIISGTSMSCPHVSGLAALIKSAHNNWSPAAIKSALMTTAYTTDNKMSPISDVSHPNGEPADPFAIGSGHVDPEKASDPGLVYDIAPGDYLNYLCSLNYSSTQIGLLSKGNFSCPSKREVVEPGDLNYPSFSVIMKAKNVSVTLKRTVTNVGYPMSDYSVQINNPKGVEMIVKPKRLSFERSGEKLSYKVSFVALEEAEDLGEFSFGSVVWVSGKYRVRSPVAGEGYEECNKDNWFGDFARVCSHTMGFREVCLFLSIFLATSAAAVDQQSYIIHMDTTKMAAPSPEQWYTALIDSINKISSLDDQEEASSAAQILYVYKTAISGFAAKLSTKKLHSLSKTPGFLAATPNELLQLHTTHSPQFLGLQREHGLWNSSNLASDIVIGLLDTGIWPEHISFQDKGLPPVPKKWKGTCQAGQKFSPSNCNRKLIGATAYIKGYEAIVGRLNATGTFRSPRDSDGHGTHTASTAAGNIVNKASFFNQAMGVATGMRFTSRIAAYKVCWTEGCANADILAAIDRAVADGVDVLSLSLGGSASAFYKDDIAIATFGAVRNGVFVSCSAGNSGPSSSTVSNIAPWIMTVAASYTDRTFPATVKLGNGQVFEGSSLYSGNSIGQLPLVYNNTAGGEEANVCTAGSLVPSLVKGKIVVCERGTNSRTAKGEQVKLAGGAGMILINTQLEGEELFADPHVLPAANLGASAGQAIIRYISSSKHQPKALIAFEGTKFGNRAPRVAAFSSRGPSLIAPDVIKPDVTAPGVNILAAWPLIASPSELESDKRRVLFNIISGTSMSCPHVSGLAALLKSAHKDWSPAAIKSALMTTAYTNDNRMSPISDVGSESGKPANPFAFGSGHVDPEKASDPGLIYDITPQDYLNYFCSLNYNSTQIGLVSRGNFTCPSKRRVGQPGNLNYPSFSVFMKKKAKNVSVTLKRTVTNVGRPRSDYTVKIKNPKGIGIRVEPEKLSFRRYGQKLSYQVSFVALGKREGLGGFSFGSLVWVSGKYGVRSPIAVTWK 1536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 233078 239675 + CmaCh04G000460.1 Cma04g00046 291127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00046 1536 ProSitePatterns Serine proteases, subtilase family, serine active site. 531 541 IPR023828 -
Cma04g00046 1536 Pfam Peptidase inhibitor I9 13 100 IPR010259 -
Cma04g00046 1536 Pfam Peptidase inhibitor I9 797 882 IPR010259 -
Cma04g00046 1536 Pfam Subtilase family 124 573 IPR000209 GO:0006508|GO:0008236
Cma04g00046 1536 Pfam PA domain 1142 1229 IPR003137 -
Cma04g00046 1536 Pfam PA domain 361 446 IPR003137 -
Cma04g00046 1536 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.1 8 749 - -
Cma04g00046 1536 CDD Peptidases_S8_3 97 567 IPR034197 -
Cma04g00046 1536 ProSitePatterns Serine proteases, subtilase family, serine active site. 1312 1322 IPR023828 -
Cma04g00046 1536 CDD PA_subtilisin_like 338 463 - -
Cma04g00046 1536 ProSiteProfiles Serine proteases, subtilase domain profile. 889 1384 - -
Cma04g00046 1536 CDD PA_subtilisin_like 1119 1237 - -
Cma04g00046 1536 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 2 100 IPR037045 -
Cma04g00046 1536 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 785 882 IPR037045 -
Cma04g00046 1536 Gene3D - 332 470 - -
Cma04g00046 1536 Gene3D - 1113 1251 - -
Cma04g00046 1536 SUPERFAMILY Subtilisin-like 881 1388 IPR036852 GO:0004252|GO:0006508
Cma04g00046 1536 Gene3D - 620 751 - -
Cma04g00046 1536 Gene3D - 1401 1535 - -
Cma04g00046 1536 PRINTS Subtilisin serine protease family (S8) signature 201 214 IPR015500 -
Cma04g00046 1536 PRINTS Subtilisin serine protease family (S8) signature 530 546 IPR015500 -
Cma04g00046 1536 PRINTS Subtilisin serine protease family (S8) signature 123 142 IPR015500 -
Cma04g00046 1536 SUPERFAMILY PA domain 346 426 IPR046450 -
Cma04g00046 1536 Pfam Fibronectin type-III domain 1432 1533 IPR041469 -
Cma04g00046 1536 Pfam Fibronectin type-III domain 651 749 IPR041469 -
Cma04g00046 1536 ProSiteProfiles Serine proteases, subtilase domain profile. 107 603 - -
Cma04g00046 1536 Gene3D Peptidase S8/S53 domain 125 616 IPR036852 GO:0004252|GO:0006508
Cma04g00046 1536 CDD Peptidases_S8_3 879 1348 IPR034197 -
Cma04g00046 1536 Gene3D Peptidase S8/S53 domain 907 1397 IPR036852 GO:0004252|GO:0006508
Cma04g00046 1536 Pfam Subtilase family 906 1374 IPR000209 GO:0006508|GO:0008236
Cma04g00046 1536 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 788 1536 IPR045051 -
Cma04g00046 1536 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 8 749 IPR045051 -
Cma04g00046 1536 SUPERFAMILY Subtilisin-like 99 607 IPR036852 GO:0004252|GO:0006508
Cma04g00046 1536 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.1 788 1536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01716 Cma-Chr2:9666342 Cma04g00046 Cma-Chr4:233078 0 dispersed
Cma04g00046 Cma-Chr4:233078 Cma06g00693 Cma-Chr6:3478009 4.42E-171 dispersed
Cma19g00117 Cma-Chr19:695950 Cma04g00046 Cma-Chr4:233078 0 dispersed
Cma04g00046 Cma-Chr4:233078 Cma04g00047 Cma-Chr4:240822 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00046 - - cmax:111487664 1483.39