Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00047 ATGAAACACACTTTAATTATAACAAGTTGCGACTTTAGAGAAGAGGGCAAAGCATCCAATGGAAGTGGAAAGTTGACCAAAATGTATGGAATTGAAGAAAGGAGATCCCCTTCTTCCCCATTTATATATTCGTCTCCTTCGCAATTGCAGCCTCTGCCTGGATCAGGCAATGTTTTTGGTGAAATCTTCAAGCGTGCCAGACTAAAGAGACTTACTCATCCACGCAATGGGCATTACGGAACTCTGGCTGCTGCTGTTGTCAATAATGCTTGCAACTTCAGCTGCTGCTGTGGATCAACAGACCTACATAATTCACATGGACGCCACAAAGATGGCCACCACCAACCCCGAACAATGGACAAGGGTCTGCCCCCAGTGCCTAAAAAATGGAAAGGCACCTGTCAAGCAGGCCCCAAGTTCTCACGTTCAAATTGCAATAAGAAACTCGTTGGCGCAAGAGCCTACATCAAAGGCTATGAGACCATCCTCGGTCGATTGAACACGACCGGGACGTTTCGGTCGGCTCGAGACTCGGACGGGCATGGCACCCACACCGCATCCACTGCTGCTGGGAACATTGTGTACAAAGCAAGCCTTTATAACCAAGGCATGGGGGCAGCCACTGGAATGAGGTTCACTTCAAGGATTGCAGCATATAAAGTATGCTGGCCGGAGGGGTGCGCCAGCACCGATATTTTGGCAGCCATAGACCGCGCTGTCGTCGATGGAGTCGATGTTCTGTCGCTTTCGTTAGGCGGCGGTGATGGTTTTTTTTACCAAGATGAAATAGCCATAGCTGCATTTGGTGCTGTTCGAAATGGGGTTTTTGTGTCATGCTCAGCTGGAAATTCTGGCCCATTTATGTCGACTGTTGGTAATGTAGCGCCATGGATCATGACAGTCGCTGCAAGCTACACTGACAGAACCTTCCCAGGCTCTGTAAAACTTGGAAATGGCCAAATATTTGAAGGCTCTTCTTTGCATTCTGGGAACAGCATAGGTGAACTCCCACTTGTTTATAACAAAACTGCGGGTGGAGAAGAAGCAAGTGTTTGTACAGCTGGTTCGCTGGTCCCATCAATGGTGAAGGGCAAAATTGTGGTATGTGAAAGAGGCACAAACTCGAGGTTTGAAAAAGGAGAGCAAGTAAAGTTAGCAGGCGGAGTTGGAATGATTCTGATCAACACACAACTTGAAGGTGAAGAGCTTTTTGGTGACTCTCATGTTTTACCTGCCATTAATCTTGGAGCTTCAGCTGGCAAAGCCATCATAAACTATATAGCTTCCTCGAAACACCCACCGAAAGCTTCAATCCTGTTTGAAGGGACCAGATATGGGAGTCGAGCACCCAGAATGGCTGCCTTTTCTTCTAGAGGACCCAGCTTCTTCGAGCCGTACGTGATAAAGCCAGACATAACTGCCCCTGGGGTTAACATATTAGCTGCTTGGCCACCCGTTGTGAGCCCAAGTGAGCTCAAGTCTGATAAAAGAAGAGTGCTGTTCAATATAATTTCGGGAACTTCTATGTCCTGTCCCCATGTTAGCGGCATAGCTGCATTACTTAAATCAGCTCACAAGAATTGGTCGCCTGCCGCTATCAAATCTGCACTTATGACCACAGCTTACGTTAATGACAACAAAAGGAGTCTCATTTCCGACGTGGGTCGCCCTAGCGGTGGACCTGCAGATCCTTACGCGTTCGGTTCTGGGCATGTGGATCCCGAGAAAGCTGTGGACCCGGGATTGGTCTACGATATCGTGCCACAAGACTACCTAAACTACTTGTGTAGCTTGAACTACACGTCAAAACAAGTTGGTTTAGTTTCAAGAGGGAATTTCAGTTGTCCATCAAAAAGAACTGTTCTTCAGCCAGGGGACTTGAACTACCCTTCTTTCTCTGTTTCCATGAAGAACAAGGCCAAGAATGTTAGATTCAAGAGAACCGTCACAAATGTCGGTACCCCAAGCAGCGATTACACTGTCAAAATCAACAATCCCAGTGGAATAAGAGTCAGTGTGAAGCCTGAGAAGCTAAGTTTTAGGAGATCCGGACAGAAGCTGAGCTACCAAGTGAGTTTTGTTGCATTGGGTAAAAGAGAGGGTTTGAGTGACTTTTCTTTTGGGTCTCTTGTTTGGGTGTCAGGAAAGTATAGTGTGAGAAGTCCTATAGCAGTAAACTGGGAGTAG 2187 47.01 MKHTLIITSCDFREEGKASNGSGKLTKMYGIEERRSPSSPFIYSSPSQLQPLPGSGNVFGEIFKRARLKRLTHPRNGHYGTLAAAVVNNACNFSCCCGSTDLHNSHGRHKDGHHQPRTMDKGLPPVPKKWKGTCQAGPKFSRSNCNKKLVGARAYIKGYETILGRLNTTGTFRSARDSDGHGTHTASTAAGNIVYKASLYNQGMGAATGMRFTSRIAAYKVCWPEGCASTDILAAIDRAVVDGVDVLSLSLGGGDGFFYQDEIAIAAFGAVRNGVFVSCSAGNSGPFMSTVGNVAPWIMTVAASYTDRTFPGSVKLGNGQIFEGSSLHSGNSIGELPLVYNKTAGGEEASVCTAGSLVPSMVKGKIVVCERGTNSRFEKGEQVKLAGGVGMILINTQLEGEELFGDSHVLPAINLGASAGKAIINYIASSKHPPKASILFEGTRYGSRAPRMAAFSSRGPSFFEPYVIKPDITAPGVNILAAWPPVVSPSELKSDKRRVLFNIISGTSMSCPHVSGIAALLKSAHKNWSPAAIKSALMTTAYVNDNKRSLISDVGRPSGGPADPYAFGSGHVDPEKAVDPGLVYDIVPQDYLNYLCSLNYTSKQVGLVSRGNFSCPSKRTVLQPGDLNYPSFSVSMKNKAKNVRFKRTVTNVGTPSSDYTVKINNPSGIRVSVKPEKLSFRRSGQKLSYQVSFVALGKREGLSDFSFGSLVWVSGKYSVRSPIAVNWE 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 240822 244052 + CmaCh04G000470.1 Cma04g00047 291128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00047 728 Pfam PA domain 337 423 IPR003137 -
Cma04g00047 728 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 119 728 IPR045051 -
Cma04g00047 728 Pfam Subtilase family 158 547 IPR000209 GO:0006508|GO:0008236
Cma04g00047 728 ProSiteProfiles Serine proteases, subtilase domain profile. 1 578 - -
Cma04g00047 728 CDD Peptidases_S8_3 120 542 IPR034197 -
Cma04g00047 728 PRINTS Subtilisin serine protease family (S8) signature 505 521 IPR015500 -
Cma04g00047 728 PRINTS Subtilisin serine protease family (S8) signature 177 190 IPR015500 -
Cma04g00047 728 ProSitePatterns Serine proteases, subtilase family, serine active site. 506 516 IPR023828 -
Cma04g00047 728 Gene3D - 595 727 - -
Cma04g00047 728 SUPERFAMILY Subtilisin-like 144 582 IPR036852 GO:0004252|GO:0006508
Cma04g00047 728 Gene3D - 307 445 - -
Cma04g00047 728 Pfam Fibronectin type-III domain 626 725 IPR041469 -
Cma04g00047 728 Gene3D Peptidase S8/S53 domain 117 591 IPR036852 GO:0004252|GO:0006508
Cma04g00047 728 CDD PA_subtilisin_like 313 438 - -
Cma04g00047 728 MobiDBLite consensus disorder prediction 105 126 - -
Cma04g00047 728 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.1 119 728 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00047 Cma-Chr4:240822 Cma10g00769 Cma-Chr10:3535963 0 dispersed
Cma04g00046 Cma-Chr4:233078 Cma04g00047 Cma-Chr4:240822 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00047 - - csv:101222234 952.584