Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00050 ATGTCTCTGTTAGGGAAATTGGAGGCTGACATTGAAATCAAGGCTCCAGCTTCAAAGTTTTATGAAATATTCTGCAACAGACCACACCATATATCCAATATTTCGGGAGACAAAGTACAAGGTTGTAAGTTAGTCGAGGGTGAATGGGGAAAAGTTGGGTCCACCGTCAATTGGAACTACTATCATGATGGAGAAGCTAAGGTTGCAAAGCATCTAATCGAAGCAGTTGATGAGGAGAAGAATATGGTCCGTTTGAAAGTGCTGGAATCAGACCTTCTGAAGCATTATAAAACCTTCAAGGGTACATTTGAAGCTACTCCAAAGGGCATTGGAAGTGTGGTTCACTGTATTTTGGAATACGAGAAATTGCATGGAGGGATTCCAGATTCTCATTCGATACTTCAGTTCTGTGTTGATCTCTGCAAAGACCTTGGGGCTGGCCTTACGGAAGGCAACTAG 459 42.48 MSLLGKLEADIEIKAPASKFYEIFCNRPHHISNISGDKVQGCKLVEGEWGKVGSTVNWNYYHDGEAKVAKHLIEAVDEEKNMVRLKVLESDLLKHYKTFKGTFEATPKGIGSVVHCILEYEKLHGGIPDSHSILQFCVDLCKDLGAGLTEGN 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 250027 250589 - CmaCh04G000500.1 Cma04g00050 291131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00050 152 CDD Bet_v1-like 5 146 - -
Cma04g00050 152 Gene3D - 1 150 IPR023393 -
Cma04g00050 152 PANTHER MLP-LIKE PROTEIN 423 1 145 - -
Cma04g00050 152 PANTHER MLP-LIKE PROTEIN 34-RELATED 1 145 - -
Cma04g00050 152 SMART Bet_v_1_2 2 151 IPR000916 GO:0006952
Cma04g00050 152 SUPERFAMILY Bet v1-like 1 149 - -
Cma04g00050 152 Pfam Pathogenesis-related protein Bet v 1 family 3 148 IPR000916 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00050 - - - csv:101211747 223.016
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00050 Cma-Chr4:250027 Cma06g01600 Cma-Chr6:9971287 1.69E-69 dispersed
Cma04g00048 Cma-Chr4:247087 Cma04g00050 Cma-Chr4:250027 2.91E-70 proximal
Cma04g00049 Cma-Chr4:248301 Cma04g00050 Cma-Chr4:250027 9.16E-38 tandem
Cma04g00050 Cma-Chr4:250027 Cma04g00051 Cma-Chr4:251935 1.82E-65 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g444 . . . . . . Bma14g01944 Bma15g00038 . . . Cma04g00050 . . Sed06g0190 . . Bhi07g00316 Tan04g1590 . Lac13g1457 Hepe01g0495 . . Cla07g00692 Cam07g0718 Cec07g0790 Cco07g0755 Clacu07g0712 Cmu07g0729 Cre07g1080 Cone13ag0754 Cone19ag0757 . . . . Chy10g00253 . Blo06g01014 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01173 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000126 7 11 4 7 2 7 0 7 4 5 8 6 16 3 3 16 6 2 0 15 6 6 11 14 6 8 10 7 13 6 216
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00050 Cma_Chr04 FPKM 0.0 0.0 0.0 0.0 5.339954 6.242054 5.344407 0.0 0.0 0.0