Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00054 ATGGCCGGATTTGTGGCCAGCGACAGCGACAGCGACAGTCCACCAGATGGGGCTCTACTGGACTTTGTTCGAGATGTTGTTCGAATGTCGGCGGGGACGAACAGTCTAAAGGTTTTCAAAAAGGATTGCACCGATCTCATGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGAGACTTTAATGGCGTCCAATTTCGACCTGTTCATACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTGGGAGTGATTCATCTCCGAGTCCGTGGCTGTGTGATTTGGTGGCGGCATTGAAGGATACTAAACGCCTTGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTTCTGAGGAAGTTACCAGGAAGATACTCTTCCAATTCCAATGTGTGACGCTGAAGTTAGAGAAGGCTTTGGGAAATCTTCCTTATGATCGCTTTGATATATCGGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCAGAAAAATATGGCTCTCTGACCGCAATTCCTCCTTCAGTTGTTCAATCTCAGTTGCTAAAGAAAAACATGGATATGTTGAATCTGAACAACTGGGCTGATAACTTCGATGTTGAGGAGAATGGTGGTGTTGATCATGAGATTACAGTGAAATTTGATGAATTTCCAAATTGCAGAGGCTTCACGAATAATGGTGTGGATCAGCTGATTTTCGAAGGACTTGAGAAGAAACTTCCATCCTTCTCAGAGGCTTGTTCTGATGGACAGGATGACTCTACCAAAAAGAGTGGAGATCAGGTGAAGAACTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCCACTGGACAGACGTATGAGAGATCTTATGTGCAAAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAACTCCAAAACTTGACTCTCACCCCAAATTATGTACTGCGAAGTCTTATTACTCAATGGTGTGTTGATCACAATATTGAGCAACCGACAGGATTAACCAATGGAAAGATCAAAAAGTGTGATGGATCATACCGTGATGTGTGCGAGGAGATGGCAGCCATTGAAACTCTGGTGCGCAAGCTAACTAGCCATTCGATCGCTGAGCAGAGAGCTTCTGTGACCGAACTTCGATCTCTATCAAAAAGAAGCACGGATAATAGAATTCTGATAGCTGAAGCAGGAGCAATACCAAATTTGGTCAATTTGTTAACTGCTGATGATGTTTTAATACAAGAGAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTGAGAGTTGGGAGCATGGAAGCGAGAGAAAATGCAGCAGCTACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCACTCCGGCTCTTGTGGATTTACTTGAAACTGGAAGCCCAAGAGGGAAAAAGGATGCTGCAACCGCACTATTTAATTTGTGTATTTATCAGGGGAATAAGGGAAGGGCTGTGAGGGCAGGGATCATCCCAGCTCTATTAAGGATGCTCAACGTCTCAGGTAACTCCATGGTCGACGAAGCTCTCACGATAATGTCGGTCCTAGCCAGCCATCAAGAAGCAAAAGTAGCGATGGTGAAAGCCAGTACCATACCTGTTCTAATAGATCTGCTGAGGACCGGATTGGCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTCTATGTAAACGAGATACCGACAACCTTTCTTGCATAAGTAGGCTTGGGGCAAAGATTCCGCTGACTGAGCTCTCCAAGAGCGGCACAGAGAGAGCAAAAAGGAAGGCTACCTCACTGTTGGAACATCTTGGAAAACTACAGCAGCTATAG 2016 44.1 MAGFVASDSDSDSPPDGALLDFVRDVVRMSAGTNSLKVFKKDCTDLMRRIVLLTHLFEEIRDFNGVQFRPVHTPSSSSSSSSSSSSSSSSSSSSSSFGSDSSPSPWLCDLVAALKDTKRLVFIASTFRSCSSSSEEVTRKILFQFQCVTLKLEKALGNLPYDRFDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNMDMLNLNNWADNFDVEENGGVDHEITVKFDEFPNCRGFTNNGVDQLIFEGLEKKLPSFSEACSDGQDDSTKKSGDQVKNSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLITQWCVDHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIAEQRASVTELRSLSKRSTDNRILIAEAGAIPNLVNLLTADDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGATPALVDLLETGSPRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLRMLNVSGNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLARNKENAAAILLALCKRDTDNLSCISRLGAKIPLTELSKSGTERAKRKATSLLEHLGKLQQL 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 262719 266017 + CmaCh04G000540.1 Cma04g00054 291135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00054 671 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 22 668 - -
Cma04g00054 671 MobiDBLite consensus disorder prediction 266 287 - -
Cma04g00054 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 365 IPR013083 -
Cma04g00054 671 Pfam Armadillo/beta-catenin-like repeat 504 542 IPR000225 GO:0005515
Cma04g00054 671 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Cma04g00054 671 PANTHER U BOX DOMAIN-CONTAINING 22 668 - -
Cma04g00054 671 Coils Coil 167 187 - -
Cma04g00054 671 Pfam U-box domain 292 363 IPR003613 GO:0004842|GO:0016567
Cma04g00054 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Cma04g00054 671 Gene3D - 468 569 IPR011989 -
Cma04g00054 671 CDD RING-Ubox_PUB 296 338 IPR045210 -
Cma04g00054 671 Gene3D - 570 670 IPR011989 -
Cma04g00054 671 MobiDBLite consensus disorder prediction 74 103 - -
Cma04g00054 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 473 515 IPR000225 GO:0005515
Cma04g00054 671 Gene3D - 374 467 IPR011989 -
Cma04g00054 671 SUPERFAMILY ARM repeat 382 665 IPR016024 -
Cma04g00054 671 SUPERFAMILY RING/U-box 286 366 - -
Cma04g00054 671 SMART arm_5 585 625 IPR000225 GO:0005515
Cma04g00054 671 SMART arm_5 421 461 IPR000225 GO:0005515
Cma04g00054 671 SMART arm_5 544 584 IPR000225 GO:0005515
Cma04g00054 671 SMART arm_5 462 502 IPR000225 GO:0005515
Cma04g00054 671 SMART arm_5 503 543 IPR000225 GO:0005515
Cma04g00054 671 SMART Ubox_2 295 358 IPR003613 GO:0004842|GO:0016567
Cma04g00054 671 ProSiteProfiles U-box domain profile. 291 365 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00054 Cma-Chr4:262719 Cma15g00946 Cma-Chr15:5061115 0 dispersed
Cma04g00054 Cma-Chr4:262719 Cma04g00997 Cma-Chr4:5158776 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00054 - - cmax:111484365 1238.79