Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00058 ATGGAGGCTGATTGTGGCTCGACTTCGTATTACAGCATTCTCGGCGTCAGTTCTGGTTGTTCCGTCGATGAAATTCGCAGAGCTTATCGCAAGCTCGCCATGAAATGGCATCCCGATAGATGTGTGAAAAATCCTTTGGCGTTATGTACAGCCAAACGGAAATTCCAACAAATCCAAGAAGCCTATTCAGTTCTATCGGATGAGAGAAAGAGAACGCGATACGACGCCGGAATTCAAGATTTTGATGATGACGAAAACGACGAGGAGGGAATGTGCGATTTCATGCAAGAACTGTGGTCGCTGATAGCGGAAGACAAGAAGAGAGAGGAAAAAAGCTATAGCTTGGAGGAGTTGCAGGGGATGTTGATGGAAATGGCGAAAGGCTTCGATTTCAATTGTTGGCCTTCTTACGGAGCTTCTGAGTGTGAAATTACCCAAGGGCCCAAGGAATTACACATCTACCAAGGCTCCGATGTGCATGTGTGGAACTGA 492 46.54 MEADCGSTSYYSILGVSSGCSVDEIRRAYRKLAMKWHPDRCVKNPLALCTAKRKFQQIQEAYSVLSDERKRTRYDAGIQDFDDDENDEEGMCDFMQELWSLIAEDKKREEKSYSLEELQGMLMEMAKGFDFNCWPSYGASECEITQGPKELHIYQGSDVHVWN 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 283462 285138 - CmaCh04G000580.1 Cma04g00058 291139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00058 163 Gene3D DnaJ domain 2 100 IPR036869 -
Cma04g00058 163 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
Cma04g00058 163 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Cma04g00058 163 SUPERFAMILY Chaperone J-domain 6 83 IPR036869 -
Cma04g00058 163 SMART dnaj_3 8 70 IPR001623 -
Cma04g00058 163 PANTHER PUTATIVE, EXPRESSED-RELATED 2 135 - -
Cma04g00058 163 CDD DnaJ 10 67 IPR001623 -
Cma04g00058 163 Pfam DnaJ domain 10 75 IPR001623 -
Cma04g00058 163 PRINTS DnaJ domain signature 11 29 IPR001623 -
Cma04g00058 163 PRINTS DnaJ domain signature 29 44 IPR001623 -
Cma04g00058 163 PRINTS DnaJ domain signature 50 70 IPR001623 -
Cma04g00058 163 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00058 - - - mcha:111022529 238.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00058 Cma15g00945 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00058 Cma-Chr4:283462 Cma15g00945 Cma-Chr15:5056996 4.22E-37 dispersed
Cma04g00058 Cma-Chr4:283462 Cma05g01084 Cma-Chr5:8560888 1.62E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g417 . . . . . . . . . . . Cma04g00058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g00983 . Cma15g00945 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000888 2 3 1 2 3 3 5 3 3 2 2 3 3 3 3 4 3 4 5 3 3 2 3 3 4 2 2 3 3 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00058 Cma_Chr04 FPKM 0.0 0.0 0.0 0.0 2.40619 2.301628 2.771334 6.257288 6.638949 6.40501