Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00061 ATGGCTGGAGATATCGAACAGCCGTTTACTTTCGATTTTCAGGTAGATTCTGCAATCTCAGACTCCATATCATTTGGCAGGTTTGAAAATGAATCATTATCTTGGGAAAGGAGGTCATCCTTCTCCCATAATCGTTACCTAGAAGAGGTAGAGAAATTCTCCAAACCGGGTTCAGTCAATGAGAAAAAGGCTTACTTTGAGGCTCATTTCAAGAAAAAGGGAGGCTTGCTTGGTCAGAATTCAGCTGAATCCCATACTTTTGACAAGGATGTATTAGAGCTAGTGAATCAAGGGGAGGATAATGAGATTATAAACAAGGAAAATCATGATGACCCTTTCGATGATAGATCTGTCAATTCACAAAACCATGGGTACCATGTCACAGAAATTGAAGAAATGCCAAAACCTGGAATTTCATCTCCTAATCCTAAATTTGAAAATTCTTTCAGCAGTGTTGGTGGTTCAGTGTCTGGTGATCTTAATGGTGCGAATGCTGAAATAAATGAACAAGATGACAGTGGGGGGAACAAATTCTCAACTTTTGTAGGTGATGATCCAGAGGTTGAAATAAAGCAAGATGTCAACAATATTGGAATGAGTGAGAATACGCCATCTGAAGCCATGGAGTCAGTCCCCAAACTAGTGAAGAAAACTGGCAAATGCAGCTCAGGAAGTCGGCAAACTCTCACTCCGAAGATGACATGTCAAAGGGAAACAAAAGCTTCCAAATCTCTGGCCAACATTCGTGAGAGTCGGAGAAATATTTCTGGTGGTGCAATCAATACTCCTGAAAAAGTGTCCAATAAAAGCAAAGGAGAGACATCACATACAACTTGCACAAATGGCCATTCATCGAAAACTACCACTCTACGTACACATGCTGTCCGTAGAACCCCCAAAGTTGAGGATTCTAAAGTTCCGAAGGGAAGACTCGTTCTCGAGAGTAGACGTGGTGAGAAGATACAAACTTCTGGAGTATCATATTCTTCTCCATCAAAGCTTGAATCTAGATCATACCTAAAGACAACCACCAGGCAAAATCGGACTGTCAACTCAGCCATGCAAGATACAGGGAAAAGGGCTTCAGCTTCCAATTTTAGAAGCACTGACAAGGGGTTGTTGTCTCGGGGCAATGCAAGTTCTGAAATTAATAAATTACAGAAGAACCTTGACATCAGATCAAAACCAGTGCCCTCTTCTTATGGTGCAGTTCGACCAGAGTCAGATGGGAAGAAGCTTTCTTCAGTAGTCTTTCCAAGTTTCATTGGCAAATACAGTCAACTTAGTTGCGTTAAGTTGAGAAACCGTTGTGTTAAGTGGCACCAAAGTAAGAAACACTCTGACGAAGTCCACAGTCGGGGCGTCATCCTCGCGTTCAAAGTTAGGAAGAGACATCAAGTCTCCACAAGTGAAGCACCAAACACTTCAAAGAACATGAGCTGCCGTTCAGCTGTGCATGTTGAAGCAAGTGATAATTCTTCGTGTCCATCAGTCAACCAAGAGTGTCTCTCGAAAGCTGTTTCAGAAACTGAAAACAAGACGAAAAAATGA 1551 41.84 MAGDIEQPFTFDFQVDSAISDSISFGRFENESLSWERRSSFSHNRYLEEVEKFSKPGSVNEKKAYFEAHFKKKGGLLGQNSAESHTFDKDVLELVNQGEDNEIINKENHDDPFDDRSVNSQNHGYHVTEIEEMPKPGISSPNPKFENSFSSVGGSVSGDLNGANAEINEQDDSGGNKFSTFVGDDPEVEIKQDVNNIGMSENTPSEAMESVPKLVKKTGKCSSGSRQTLTPKMTCQRETKASKSLANIRESRRNISGGAINTPEKVSNKSKGETSHTTCTNGHSSKTTTLRTHAVRRTPKVEDSKVPKGRLVLESRRGEKIQTSGVSYSSPSKLESRSYLKTTTRQNRTVNSAMQDTGKRASASNFRSTDKGLLSRGNASSEINKLQKNLDIRSKPVPSSYGAVRPESDGKKLSSVVFPSFIGKYSQLSCVKLRNRCVKWHQSKKHSDEVHSRGVILAFKVRKRHQVSTSEAPNTSKNMSCRSAVHVEASDNSSCPSVNQECLSKAVSETENKTKK 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 287796 291259 - CmaCh04G000610.1 Cma04g00061 291142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00061 516 MobiDBLite consensus disorder prediction 295 317 - -
Cma04g00061 516 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 1 508 IPR044216 -
Cma04g00061 516 MobiDBLite consensus disorder prediction 250 294 - -
Cma04g00061 516 MobiDBLite consensus disorder prediction 320 376 - -
Cma04g00061 516 MobiDBLite consensus disorder prediction 250 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00061 - - - cmos:111447605 857.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00061 Cma04g02080 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00061 Cma-Chr4:287796 Cma04g01602 Cma-Chr4:8087376 1.56E-21 dispersed
Cma04g00061 Cma-Chr4:287796 Cma04g01004 Cma-Chr4:5197950 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g367 . . . . . . . . . . . Cma04g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02080 . . . . . . . . . . . . Cla01g00580 Cam01g0607 Cec01g0597 Cco01g0621 Clacu01g0599 Cmu01g0572 Cre09g1935 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009363 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00061 Cma_Chr04 FPKM 2.413538 2.779381 2.896121 2.972714 2.885188 2.167321 2.583745 2.474176 2.991138 2.726383