Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00062 ATGGTCAAGCTTCTTCTATATGAAGATTATTTACAATTTTATAAATATTACAAATCTCTTCCTCTGATCCGTTGTATATATTTCGATTCTCTTCTCAAAATCTTCGACCACAAGGGGAAGTGCTCAAGAACATGCGAAGATTTTGAAATGAGTAATCGGACAGGACTTCTTCGAATTCGCCTGTTGCGAGGCATCAATCTCGCCATTCGTGATGCTCCCACCCGCAGCAGCGATCCCTACGTCGTCATCTCCACCGCTAACCAGAAATTCAAATCTCGAGTGGTGAAAAAAAACTGCAATCCACAATGGAACGAGGAATTCACTCTCTCAATTACGGACATCAACACACCAATCAAATTAGCAGTGTTCGACAAAGATCGGTTCACGAAAGACGACGGAATGGGGGATGCAGAGATCGACATAAAACCGTACATAGAGTGTTTGAATATGGGATTAGAGAGTCTGCCTAAGGGTTGTGTGGTGAAAAGGGTTCAACCAAGCAGATCAAACAACCTTGCAGATGAGAGCCCTTGCGTTTGGAACGATGGTAAGATCATCCAAGACATGACTCTCAGATTACAGAATGTTGAATGTGGTGAAATCGCGATTCAGATTCAGTTGTTCAATGCTTCTGGGATTAAAGGCATGAGAACCTACTCTTTATCCTGA 669 42.45 MVKLLLYEDYLQFYKYYKSLPLIRCIYFDSLLKIFDHKGKCSRTCEDFEMSNRTGLLRIRLLRGINLAIRDAPTRSSDPYVVISTANQKFKSRVVKKNCNPQWNEEFTLSITDINTPIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLESLPKGCVVKRVQPSRSNNLADESPCVWNDGKIIQDMTLRLQNVECGEIAIQIQLFNASGIKGMRTYSLS 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 293140 294741 + CmaCh04G000620.1 Cma04g00062 291143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00062 222 CDD C2_ArfGAP 55 199 - -
Cma04g00062 222 ProSiteProfiles C2 domain profile. 37 157 IPR000008 -
Cma04g00062 222 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 50 214 - -
Cma04g00062 222 Gene3D C2 domain 40 210 IPR035892 -
Cma04g00062 222 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 51 151 IPR035892 -
Cma04g00062 222 Pfam C2 domain 56 143 IPR000008 -
Cma04g00062 222 SMART C2_3c 56 153 IPR000008 -
Cma04g00062 222 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 50 214 IPR044562 -
Cma04g00062 222 PRINTS C2 domain signature 118 126 IPR000008 -
Cma04g00062 222 PRINTS C2 domain signature 73 85 IPR000008 -
Cma04g00062 222 PRINTS C2 domain signature 97 110 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00062 Cma-Chr4:293140 Cma18g00074 Cma-Chr18:329922 3.44E-67 dispersed
Cma04g00062 Cma-Chr4:293140 Cma04g02122 Cma-Chr4:14870828 1.25E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00062 - - csv:101205028 318.931