Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00065 ATGGCTACGCTTCAGACGTGGAGGAAAGCCTATGGCGCTCTCAAGGATTCTACCAAAGTCGGCCTTGCCCATGTCAACAGCGATTACGCGGATTTGGATGTGGCAATAGTCAAAGCTACTAACCACGTCGAGTGCCCGCCGAAAGAGAGACATCTCAGGAAAATCTTGATTGCTACATCTGCAATTAGACCTCGCGCTGATGTTGCTTATTGCATTCATGCCCTCGCTCGACGCTTGTCCAAGACGCGCAATTGGACGGTAGCTTTGAAAACATTAATCGTCATACATAGGACCTTGAGGGAGGGCGATCCAACATTTAGGGAAGAGCTTTTGAATTTTACACAAAGAGCCCGAATTATTCAACTGTCTAATTTTAAGGATGATTCAAGTCCTATCGCTTGGGATTGCTCTGCATGGGTACGCACATATGCATTGTTTTTAGAGGAGCGACTCGAATGTTTCAGGATACTAAAGTATGACATTGAATCCGAACGCCTGCCAAGACCTGCCCAAGGTCAGGAGAAGGGCTACAGCAGAACCAGGGAACTGGACAGTGAAGAACTGTTGGAACATTTGCCTGCCTTGCAACAGCTGTTGTATCGTCTTATTGGCTGCAGGCCTGAAGGAGCAGCTATTGGGAATTATGTTATACAGTATGCCCTGGCACTGGTATTGAAAGAGAGCTTTAAAATCTATTGTGCTATTAATGATGGAATTATAAATCTCGTTGACAAGTTTTTTGAGATGCCAAGACATGAGGCTATCAAAGCCCTTGATATCTACAAAAGAGCTGGCCAACAGGCCGGAAGCCTATCAGATTTCTATGATATTTGCAAAGGGTTGGAACTTGCTAGGAATTTCCAGTTTCCTGTTTTAAGAGAACCTCCACAGTCATTTCTTAATACGATGGAAGAGTACATTCGGGAGGCACCACGAATGGTTACGGTACCAAATGAACCACTGTTGCAACTTACTTACAAGCCGGAAGATTCTCCTTCTGAAGATCCGAACTTACCCACTGATGAAACGGAGGCATCTCCTTCACATGATCTTTCTATTACTCCTGTTGATTCGGCTCCATTGCCACCTCCAGCACCAGCTCCTGCTCCTGAAAGGCATTTAGATACTGGAGATTTATTGGGATTAAGTCTTGATACCACCGAAGTATCTGCGATTGAGGACAGAAATGCTTTGGCTTTAGCCATAGTTCCTTCTGGTGATGCAGCAGCACCCACATTTCATTCCAATGGTGCACAGCCAAAGGATTTCGACCCTACTGGATGGGAGCTTGCCTTGGTCACCACTCCAAGTACTAACCTTTCATCAACTAATGAGAGACAACTGGCTGGTGGGCTGGACACGCTCACTCTCGACAGTCTATACGATGAGGGTGCATATAGAGCTTCTCTACAGCCCGTGTATGGTAAGCCCGCACCAAATCCATTTGAGGTGCAAGATCCATTTGCATACTCCAATGCCATCGCTCCAGCTCCATCAGTTCAAATGGCGCCAATACCTCAGCAGCAGGCTAATCCCTTTGGTCCATACCAACCTACCTTTTCACAGCAACAATCATTTACGATGGATCCAACAAATCCTTTTGGTGGTGCAGGTTTTGGAGCATTCCCTGCTCCTAACCACCATATTGTTCCTCCAAATGCTAACAATCCATTTGGAAGCACAGGCCTTCTGTAG 1695 46.08 MATLQTWRKAYGALKDSTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSAIRPRADVAYCIHALARRLSKTRNWTVALKTLIVIHRTLREGDPTFREELLNFTQRARIIQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIESERLPRPAQGQEKGYSRTRELDSEELLEHLPALQQLLYRLIGCRPEGAAIGNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALDIYKRAGQQAGSLSDFYDICKGLELARNFQFPVLREPPQSFLNTMEEYIREAPRMVTVPNEPLLQLTYKPEDSPSEDPNLPTDETEASPSHDLSITPVDSAPLPPPAPAPAPERHLDTGDLLGLSLDTTEVSAIEDRNALALAIVPSGDAAAPTFHSNGAQPKDFDPTGWELALVTTPSTNLSSTNERQLAGGLDTLTLDSLYDEGAYRASLQPVYGKPAPNPFEVQDPFAYSNAIAPAPSVQMAPIPQQQANPFGPYQPTFSQQQSFTMDPTNPFGGAGFGAFPAPNHHIVPPNANNPFGSTGLL 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 305979 312306 + CmaCh04G000650.1 Cma04g00065 291146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00065 564 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Cma04g00065 564 Gene3D ANTH domain 173 323 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cma04g00065 564 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Cma04g00065 564 PANTHER OS05G0549000 PROTEIN 1 543 - -
Cma04g00065 564 SMART enth_2 30 161 IPR013809 -
Cma04g00065 564 Gene3D - 7 161 IPR008942 -
Cma04g00065 564 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Cma04g00065 564 MobiDBLite consensus disorder prediction 324 377 - -
Cma04g00065 564 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 543 IPR045192 GO:0048268|GO:0072583
Cma04g00065 564 CDD ANTH_N 32 154 - -
Cma04g00065 564 MobiDBLite consensus disorder prediction 338 353 - -
Cma04g00065 564 SUPERFAMILY GAT-like domain 178 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00065 - - - csv:101205968 1029.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01013 Cma04g00065 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00065 Cma-Chr4:305979 Cma04g01013 Cma-Chr4:5252443 0 dispersed
Cma19g01044 Cma-Chr19:8844142 Cma04g00065 Cma-Chr4:305979 6.28E-61 dispersed
Cma04g00065 Cma-Chr4:305979 Cma11g00519 Cma-Chr11:2463232 2.74E-135 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g460 . . . . . . . . Cmo04g01091 . Cma04g01013 Cma04g00065 Car04g00949 Car04g00062 . . . . . . . . . . Cla07g00570 Cam07g0596 Cec07g0663 Cco07g0636 Clacu07g0599 Cmu07g0633 Cre07g0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01148 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001235 1 2 1 3 2 3 4 3 2 2 2 2 3 1 2 4 3 4 4 3 2 2 2 2 3 3 2 6 2 2 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00065 Cma_Chr04 FPKM 22.816223 26.462549 30.586525 30.291267 18.389175 20.44442 16.942089 23.74054 22.226366 19.349117