Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00066 ATGGAAAGGGTCGATTTTCTTGAAGCTGCAAAGAATGTTTGTTTCTGGGGCGTGACATTTGTTTGGGTTGAAACTTCCAGTGAGTGTATAGTGAAAGGTATAAGCTGCCTTGCCCTTCCAGTTTTTCAGTGGTCAAGCAGTGAGTCCATTGGAAGATCAAAATTCAATTTTTGTTTGTTCCACCCTTCTCCAATCATCCCATTCTGCAACAACAGCAGCAACGCCATCCCTATTCGATGGCGTAGACGAGCATGGCGACGAAGTTCAAGAGTTTGTTGCAGAAACTCAAAACAACATTCCGATCGGGTTCCTCTAGAGGTAGCTCCAACAAATTCACTTGCTTTCGCCTTCTTTTCTGTATGTATCTATGTCTGTTTTGATAGCGTTGGATTAGACACCCAGGGCGCAGAGTATTTGGAGCAGATTGCAGCTAAGAGGCTTATTCCCTTCCAAACCTTAGCTCAAGCTACCAACAATTTTCATCCAAATCACAAGCTCGGCGAAGGCGGCTTTGGCCCAGTTTACAAGGGAAAGTTAAAGGATGGAAGAGTTATTGCAGTTAAAAAGTTATCGCATCATTCAAAACAGGGAAGAAGAGAGTTTATGAGTGAGGCCAAGTTGTTGGGTGGTGTGCAGCACAGAAATGTGGTTGCTTTGTTGGGATACTGCGTTCATGGTTCAGAGAAGCTGCTGGTTTACGAGTACGTCTCCAATGAGAGCCTTGACAAGCTTCTCTTCAAATCCAGCAGACGTGGAGAGCTTGATTGGAAGAGGAGGTACGACATAATCGCTGGCATAGCACGAGGCTTGCAATATCTTCATGTAGATTCACATAATCTCATAGTCCATCGTGATATTAAAGCTAGCAATATTTTATTGGATGATAACTGGGTCCCTAAGATTGCTGATTTTGGAATGGCCCGTCTCTTCCCTGAGGATCAAACTTATGTCAATACTCGTATTGCTGGTACAAATGGATATATGGCTCCTGAATATCTTATGCAAGGTCGTCTATCAGCAAAGGTAGATGTTTTTAGCTTTGGTGTCTTGGTCCTCGAACTCATCAGTGGCCAGCGTAACTCGTCATTTGGCTCATATTTCGAAGCTGAAAACCTAATTGATTGGGCTTACAAGCTATATAAGAAGGGCAGGAGTTTGGAGATGATGGACCCAACATTAGCATCCTCGGCTGTTCCTGACCAAGTGGCAATGTGCATTCAGATTGGATTACTTTGCGCACAAGGTGATCCAAAACTACGGCCGACCATGCCACGTGTCGTTTTGCTCCTCTCAAAGAGACCTGGTACTTTGGAGGAACCAACGAGACCAAGAATACTCGGTCCTTGA 1347 44.39 MERVDFLEAAKNVCFWGVTFVWVETSSECIVKGISCLALPVFQWSSSESIGRSKFNFCLFHPSPIIPFCNNSSNAIPIRWRRRAWRRSSRVCCRNSKQHSDRVPLEVAPTNSLAFAFFSVCIYVCFDSVGLDTQGAEYLEQIAAKRLIPFQTLAQATNNFHPNHKLGEGGFGPVYKGKLKDGRVIAVKKLSHHSKQGRREFMSEAKLLGGVQHRNVVALLGYCVHGSEKLLVYEYVSNESLDKLLFKSSRRGELDWKRRYDIIAGIARGLQYLHVDSHNLIVHRDIKASNILLDDNWVPKIADFGMARLFPEDQTYVNTRIAGTNGYMAPEYLMQGRLSAKVDVFSFGVLVLELISGQRNSSFGSYFEAENLIDWAYKLYKKGRSLEMMDPTLASSAVPDQVAMCIQIGLLCAQGDPKLRPTMPRVVLLLSKRPGTLEEPTRPRILGP 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 312376 320021 + CmaCh04G000660.1 Cma04g00066 291147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00066 448 Gene3D Phosphorylase Kinase; domain 1 132 235 - -
Cma04g00066 448 CDD STKc_IRAK 166 432 - -
Cma04g00066 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Cma04g00066 448 ProSiteProfiles Protein kinase domain profile. 160 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00066 448 Gene3D Transferase(Phosphotransferase) domain 1 236 438 - -
Cma04g00066 448 Pfam Protein tyrosine and serine/threonine kinase 163 427 IPR001245 GO:0004672|GO:0006468
Cma04g00066 448 SUPERFAMILY Protein kinase-like (PK-like) 143 430 IPR011009 -
Cma04g00066 448 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 137 445 - -
Cma04g00066 448 SMART serkin_6 160 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00066 448 PANTHER RECEPTOR-LIKE KINASE 137 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00066 Cma-Chr4:312376 Cma13g00696 Cma-Chr13:6334286 2.24E-101 dispersed
Cma04g00066 Cma-Chr4:312376 Cma04g01012 Cma-Chr4:5245261 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68453 PF07714 PK_Tyr_Ser-Thr 8.80E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00066 - - cmax:111488095 638.647