Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00070 ATGGAGAGGGATTTTTTAGGTCTCAGCTCCAAGGAGGAGCCGTTGGCTAAGGTGAAAGAGGAAATTGACAGCGATGGAGCCCAAGGGTATTCTAAAAGCTCTGGTGTTCCTCATCCGATGCCTTTCAAGATTTCTGCTGAGGACAAGACTGCGTATCCGAAAACGTTCAATCTGGATAGGCAAGGTGGCCCTCAAATTTCCCTGGCAGCTTATCCTATGCAATCTGATTTGTATTCGATTCATCGTCCTCACGAAACCAAACTATTTTCCGTTCCAAATCAAGGTATATCTGTTTCATTAGGTAATCCATCCGTGAAGAACCCTTTTGCTCTTCCTGCTCAGATGGCTGGTCCTATCCTCAAACAACCACTTGGAGGAGTCCCGGTTTCAAGCGCTCTGAATTCATTTTTCCCACCATTTGGATCCATTTCTGGGATCACTGAACCATGGAATAGCATGAAACCAACTGGTGGGTCTCCAGCTCAACTGACTATTTTTTATGGTGGTACCGTCAAAGTCTATGATGACATTACCCCTGAAAGGGCTCAGGCTATAATGTTCTTGGCTGGGGCTGGGGCTTCCATATCCAACATTGCACATCAAAAAGCTCAAGCTCATGGAATGGGTGCAAAAATGGCCGCAGCAAGTGATGGTGCTCCCAAGAACCAACCCGTGAGCATCTTGCCCTGCCCTGCTCTATCTAGCCCCTTGTCTGTTTCTTCTCACACAGGAGTCCAGTCTGGGAGTGGTTCAAGTTGTTCTGATGAGTTGGGAGGAGTTAAAACCAAGGGACTTCCCACCACTCCTATCAGCAAAGGAGAGCCTCCAAGAATAGTCAATGCAGTCGGACCTGCTGCTACTGCTATGCTGCCCTCTGCTGTTCCACAGGCTCGTAAAGCATCCTTAGCTCGGTTCTTAGAAAAGCGCAAGGAAAGGGTCATGAGCTCTTCTCCATACAATCTTAGCAAGAAACATCCCGAGTGTGCTGCGACAGAATCCAACGGTGCAAATTTCTCGAGTCCTATCACGAGCAACAGTGCTAATGTGGCAAGCTGA 1056 47.92 MERDFLGLSSKEEPLAKVKEEIDSDGAQGYSKSSGVPHPMPFKISAEDKTAYPKTFNLDRQGGPQISLAAYPMQSDLYSIHRPHETKLFSVPNQGISVSLGNPSVKNPFALPAQMAGPILKQPLGGVPVSSALNSFFPPFGSISGITEPWNSMKPTGGSPAQLTIFYGGTVKVYDDITPERAQAIMFLAGAGASISNIAHQKAQAHGMGAKMAAASDGAPKNQPVSILPCPALSSPLSVSSHTGVQSGSGSSCSDELGGVKTKGLPTTPISKGEPPRIVNAVGPAATAMLPSAVPQARKASLARFLEKRKERVMSSSPYNLSKKHPECAATESNGANFSSPITSNSANVAS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 335154 337875 + CmaCh04G000700.1 Cma04g00070 291151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00070 351 MobiDBLite consensus disorder prediction 239 276 - -
Cma04g00070 351 Pfam tify domain 159 190 IPR010399 -
Cma04g00070 351 MobiDBLite consensus disorder prediction 332 351 - -
Cma04g00070 351 MobiDBLite consensus disorder prediction 239 256 - -
Cma04g00070 351 MobiDBLite consensus disorder prediction 1 26 - -
Cma04g00070 351 MobiDBLite consensus disorder prediction 1 43 - -
Cma04g00070 351 ProSiteProfiles Tify domain profile. 156 191 IPR010399 -
Cma04g00070 351 PANTHER PROTEIN TIFY 7 31 348 - -
Cma04g00070 351 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 31 348 IPR040390 -
Cma04g00070 351 SMART tify_2 156 191 IPR010399 -
Cma04g00070 351 MobiDBLite consensus disorder prediction 311 351 - -
Cma04g00070 351 Pfam Jas motif 295 319 IPR018467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00070 K13464 JAZ; jasmonate ZIM domain-containing protein - csv:101213109 551.206
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00070 Cma04g01015 ECH
Cma04g01015 Cma04g00070 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00070 Cma-Chr4:335154 Cma18g00080 Cma-Chr18:345525 1.57E-53 dispersed
Cma04g00070 Cma-Chr4:335154 Cma04g01015 Cma-Chr4:5273749 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g480 . . . . . Bpe10g00980 . . Cmo04g01093 . Cma04g01015 Cma04g00070 Car04g00951 Car04g00065 . . . Bhi07g00375 Tan04g1530 . Lac13g1371 Hepe01g0565 . . Cla07g00565 Cam07g0591 Cec07g0659 Cco07g0630 Clacu07g0595 Cmu07g0628 Cre07g0968 . Cone19ag0746 Cone6ag0376 Cone9ag0405 Lsi04g01112 . . . Blo06g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001064 2 5 0 2 2 2 4 2 2 1 2 2 4 2 2 4 2 5 4 2 2 2 2 2 2 2 2 11 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34733 PF06200 tify 3.00E-15 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00070 Cma_Chr04 FPKM 43.141193 49.547604 72.960457 76.946739 39.199036 34.237766 40.378643 63.918282 65.918022 66.71859