Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00071 ATGCCTTCATTTCTCCTCCTCTTTCTCTTCACTTCCGCCCTGTCGCCGCCGTCCTCGGCGACAACCACCGCCGAGTCCTTCGTCTACGGCGGCTGTTCCCAAACCAAATACACTTCCGGTTCAACCTATGAGTCAAATCTCAACTCCATCCTCACCTCTCTTATAAATTCTGCCTCCTTCACATTATACACTAACTCCACCGTCGCCGGCGCCGGCGACGGGGACACTGTGTACGGACTGTTCCAGTGCCGGGGCGACCTCCAAAACGCGGCCTGTGCCAAGTGCGTGGCCCACGCTGTCGCCCAGTTGGGGTCGATCTGTCTGGACGCGTGTGGTGGCTCGTTGCAGTTGGAGGGGTGTTTTGTGAAGTACGACAATGTTAGCTTTTTGGGAGTGGAGGACAAGACAGTGGTGGTGAAGAAGTGTGGGGCAGTGATGGGGTATGATTCTGGTGGGTGGGCTAGAAGGGATGCGGTGTTAGCGTATTTAGCGGCGGCGGACGGCAGCGGTGGTGGATATCAGCCGTTTAGAGTGGGTGGGTCCGGGGATGTTCAAGGGGTGGCGCAATGCGTTGGGGATTTGGATGCTGGAGAGTGCCAGGACTGTGTGGTGACGGCAGTGGGACGGCTGAAGGCGGAGTGTGCGGCGGCGGGGTGGGGGGATGTGTTCTTGGGGAAGTGCTATGCGAGGTTTTCTCATGGCGGTGTCCGCCCCCACGGCGGCGGCGGCGGAAATGACGGTAGAAATCCGGACGTGGAGATAGAGAAGACTTTGGCGGTAATAATAGGGCTCATTGCTGGGATTGCGTTCATTGTTGTGTTCCTCGCTTTCCTAAGCCATTATTGCGAGAAACGAAAAGATCTATCATCAATGGCATTGGAATGGGTCGTTCTTGGCTATGCCGCTGCTGCTGAGGCAATCATGCTCCTCCTCCTCACCATCCCAGGCCTCGATGGTCTCCGGAAGGGCCTAATTGCTGTTACTCGCAATCTTCTCAAGCCATTCCTCTCCGTCGTTCCCTTTTGCCTCTTCTTGCTCATGGATATCTACTGGAAATACGAAACTCTCCCCAGTTGTGAATCCGACTCATGCACCCCTTCTGAGTTCCTTCGCCACCAGAAATCGATCATGAAGAGCCAACGCAATGCGCTCTTGATCGCTTCGGCGCTTGTGTTCTACTGGCTCTTGTACTCTGTCACCCATTTGCTTGTCAAGGTTGAGCAATTGAACCAGCGTATTGAGAGGTTGAAGAATCGGGATTGA 1263 55.11 MPSFLLLFLFTSALSPPSSATTTAESFVYGGCSQTKYTSGSTYESNLNSILTSLINSASFTLYTNSTVAGAGDGDTVYGLFQCRGDLQNAACAKCVAHAVAQLGSICLDACGGSLQLEGCFVKYDNVSFLGVEDKTVVVKKCGAVMGYDSGGWARRDAVLAYLAAADGSGGGYQPFRVGGSGDVQGVAQCVGDLDAGECQDCVVTAVGRLKAECAAAGWGDVFLGKCYARFSHGGVRPHGGGGGNDGRNPDVEIEKTLAVIIGLIAGIAFIVVFLAFLSHYCEKRKDLSSMALEWVVLGYAAAAEAIMLLLLTIPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIYWKYETLPSCESDSCTPSEFLRHQKSIMKSQRNALLIASALVFYWLLYSVTHLLVKVEQLNQRIERLKNRD 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 339796 342959 - CmaCh04G000710.1 Cma04g00071 291152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00071 420 Gene3D - 24 129 IPR038408 -
Cma04g00071 420 Gene3D - 153 234 IPR038408 -
Cma04g00071 420 ProSiteProfiles Gnk2-homologous domain profile. 134 236 IPR002902 -
Cma04g00071 420 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 5 286 - -
Cma04g00071 420 Pfam Salt stress response/antifungal 32 126 IPR002902 -
Cma04g00071 420 Pfam Salt stress response/antifungal 176 232 IPR002902 -
Cma04g00071 420 PANTHER PLASMODESMATA-LOCATED PROTEIN 6 5 286 - -
Cma04g00071 420 Coils Coil 399 420 - -
Cma04g00071 420 ProSiteProfiles Gnk2-homologous domain profile. 25 129 IPR002902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00071 - - - csv:101213591 450.284
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01017 Cma04g00071 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01720 Cma-Chr2:9685729 Cma04g00071 Cma-Chr4:339796 3.78E-38 dispersed
Cma04g00071 Cma-Chr4:339796 Cma15g00736 Cma-Chr15:3583452 5.00E-95 dispersed
Cma14g01843 Cma-Chr14:13136511 Cma04g00071 Cma-Chr4:339796 1.70E-33 dispersed
Cma18g00087 Cma-Chr18:386247 Cma04g00071 Cma-Chr4:339796 1.87E-15 dispersed
Cma04g01018 Cma-Chr4:5284152 Cma04g00071 Cma-Chr4:339796 3.58E-162 transposed
Cma04g00071 Cma-Chr4:339796 Cma04g01017 Cma-Chr4:5281509 1.20E-86 wgd
Cma04g00071 Cma-Chr4:339796 Cma04g02111 Cma-Chr4:14751778 4.82E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g483 . . . . . . Bma14g01900 . Cmo04g01094 . Cma04g01017 Cma04g00071 Car04g00952 Car04g00066 Sed06g0167 . . Bhi07g00377 Tan04g1528 Cmetu10g0671 Lac13g1370 Hepe01g0567 . . Cla07g00564 Cam07g0590 Cec07g0657 Cco07g0626 Clacu07g0593 Cmu07g0627 Cre07g0967 Cone13ag0737 . . . Lsi04g01111 . . Cme10g01601 . Blo11g00971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g530 . . . . . . Bma14g01900 . . . . Cma04g00071 . Car04g00066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010363 1 1 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00071 Cma_Chr04 FPKM 13.9 15.147024 9.020042 8.923037 13.016481 10.423014 13.912765 7.113567 7.779692 7.434207