Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00072 ATGGCTGAACTCTCGAATCTCTCCTCGAGCCCCAGTGAAGAAAGCGAGAACTTGCTGCAGAAACACGTGGCGTTCTTCGATAGGAACCATGACGGCGTCGTTTATCCATGGGAAACCTTCAAAGGCTTCCGAGCGATCGGGGCGGGTTTGTTTCTGTCCTCCGTCAGTGCTGTTTTTATTAACATCGGACTCAGCTCCAAAACCCGACCCGGGAAATGCCCCAACTTTTTATTCCCAATTGTGATAAAGAACATTCATCTCGCCAAACATGGAAGCGATTCTGGTGTATATGATTACGAGGGAAGGTTCGTTGCATTAAAGTTTGAAGAAATTTTTAAAAAGCATGCACTAACGTATCCGGATGCCTTAACTGAAAAAGAGCTTAAAGCGATGCTGAGAGCAAATAGAGAGCCGAAGGACTATAAGGGATGGCTGGGTGCATGGGCAGAGTGGACAGCTCTATACATCCTTTGCAAAGATGAGAATGGATTGCTTACAAAGCAAACGGTGAAGGGTGTTTACGATGGAAGCTTATTCCAACATATGGAGAAAGACAGAGCATCAAAGAAGAAGAAATGA 579 45.25 MAELSNLSSSPSEESENLLQKHVAFFDRNHDGVVYPWETFKGFRAIGAGLFLSSVSAVFINIGLSSKTRPGKCPNFLFPIVIKNIHLAKHGSDSGVYDYEGRFVALKFEEIFKKHALTYPDALTEKELKAMLRANREPKDYKGWLGAWAEWTALYILCKDENGLLTKQTVKGVYDGSLFQHMEKDRASKKKK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 344698 346335 - CmaCh04G000720.1 Cma04g00072 291153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00072 192 PANTHER PEROXYGENASE 3-RELATED 11 192 IPR007736 -
Cma04g00072 192 Pfam Caleosin related protein 16 182 IPR007736 -
Cma04g00072 192 PANTHER INACTIVE PEROXYGENASE-LIKE PROTEIN-RELATED 11 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00072 K17991 PXG; peroxygenase [EC:1.11.2.3] - csv:101213829 314.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01019 Cma04g00072 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00072 Cma-Chr4:344698 Cma17g00144 Cma-Chr17:717986 9.11E-59 dispersed
Cma05g00771 Cma-Chr5:4545686 Cma04g00072 Cma-Chr4:344698 5.96E-54 transposed
Cma04g00072 Cma-Chr4:344698 Cma04g01019 Cma-Chr4:5286199 1.69E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g486 . . Bda01g01800 . Bpe13g01012 Bpe10g00979 . . . . Cma04g01019 Cma04g00072 Car04g00954 Car04g00068 Sed06g0164 . . Bhi07g00379 Tan04g1526 Cmetu10g1601 Lac13g1359 Hepe01g0573 . . Cla07g00554 Cam07g0587 Cec07g0650 Cco07g0621 Clacu07g0590 Cmu07g0625 Cre07g0964 . . . . Lsi04g01109 . . Cme10g01608 . . . . . Bpe02g01974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01019 CST 78 263 Pollen Coat Proteome AT1G23240 55.4 5.0e-60 228.4
Cma04g00072 CST 13 192 Pollen Coat Proteome AT1G23240 56.1 5.2e-57 218.4
Cma04g01019 CST 78 263 Pollen Coat Proteome AT1G23240 55.4 5.0e-60 228.4
Cma04g00072 CST 13 192 Pollen Coat Proteome AT1G23240 56.1 5.2e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00072 Cma_Chr04 FPKM 71.934875 87.129921 97.285034 91.08374 55.516159 45.769173 51.823708 7.172046 7.920834 5.913933