Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00073 ATGGGCTCTGAAGGATCCAGGGTGGTTGTTCCTAGGAATTTTAGATTATTGGAAGAGCTCGAGAGAGGTGAAAAAGGGATTGGTGATGGAACTGTGAGCTATGGCATGGATGATCCAGATGACTTATTAATGCAGTCTTGGACTGGGACCATTATAGGTCCACCTAATACTGTTCATGAAGGGAGAATCTACCAATTGAAGCTATTTTGTGGAAAGGATTATCCAGATAATCCACCGGCTGTTAGATTCCAAAGTAGGATAAACATGTCCTGTGTCAATCCAGAAACTGGAATGGTTGAAAGGAACCTTCTCCCCATGCTTGCTAAATGGCAAAGGGAATATACAATGGAGGATATATTGACTCAACTGAAGAAAGAAATGATGTCATCTCATAATCGGAAGCTTGTTCAGCCTCTTGAAGGGAATGAAGAGGGAAGGACGGAGCAAAAGGGTCTGGTCCTGAAATGTTGCATTCTTTGA 480 42.5 MGSEGSRVVVPRNFRLLEELERGEKGIGDGTVSYGMDDPDDLLMQSWTGTIIGPPNTVHEGRIYQLKLFCGKDYPDNPPAVRFQSRINMSCVNPETGMVERNLLPMLAKWQREYTMEDILTQLKKEMMSSHNRKLVQPLEGNEEGRTEQKGLVLKCCIL 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 347797 352586 - CmaCh04G000730.1 Cma04g00073 291154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00073 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 8 144 - -
Cma04g00073 159 Pfam Ubiquitin-conjugating enzyme 42 130 IPR000608 -
Cma04g00073 159 SMART ubc_7 14 158 - -
Cma04g00073 159 Gene3D Ubiquitin Conjugating Enzyme 2 144 IPR016135 -
Cma04g00073 159 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 159 IPR000608 -
Cma04g00073 159 SUPERFAMILY UBC-like 9 139 IPR016135 -
Cma04g00073 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1A-LIKE 8 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00073 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant - csv:101214074 316.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00073 Cma15g00976 CCT
Cma04g01020 Cma04g00073 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00073 Cma-Chr4:347797 Cma15g00976 Cma-Chr15:5491163 3.64E-94 dispersed
Cma04g00073 Cma-Chr4:347797 Cma04g01020 Cma-Chr4:5290013 3.73E-115 wgd
Cma04g00073 Cma-Chr4:347797 Cma04g02110 Cma-Chr4:14743638 4.61E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g487 . . . . . Bpe10g00978 Bma14g01936 . Cmo04g01096 . Cma04g01020 Cma04g00073 Car04g00955 Car04g00069 Sed02g0481 . Cpe01g01833 Bhi07g00380 Tan04g1525 Cmetu09g1222 Lac13g1355 . . . Cla07g00553 Cam07g0586 Cec07g0649 Cco07g0620 Clacu07g0589 Cmu07g0624 Cre07g0963 . Cone19ag0744 Cone6ag0372 Cone9ag0401 Lsi04g01108 . . Cme10g01611 . . . . . . . . . . Cmo15g01023 . Cma15g00976 . Car15g00922 Cpe13g00351 . . . . . . . . Cla01g00634 Cam01g0662 Cec01g0654 Cco01g0680 Clacu01g0650 Cmu01g0624 Cre09g1880 . . . Cme09g01348
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000459 4 2 3 5 4 3 6 2 3 2 3 3 6 2 3 5 3 7 6 3 3 3 3 3 2 2 2 18 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00073 Cma_Chr04 FPKM 27.503317 28.232077 48.916977 45.48069 28.747925 27.850302 31.147566 70.268188 73.202721 82.594421