Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00074 ATGCACGGCCTCTGCAACTCAAAACCCCTCTCTCTATTTCAGCCCACCTTCCCCACCAGAAACCATAGTCGAACTTCTATTAACAAACTCCACATCGTCAAAATGGCCACCGATTTCGATCGCGCCGCCGAATTGAAGCAATTCGATGAAACCAAAGCCGGCGTCAAAGGCCTTCTCGATGCTGGCCTCAATCAAATCCCTCGCATCTTCATCCACCCGCCCGAAACTCTCTCCGACCTCAAACCAACCCTTAAATCCTCCGGCGAAGCCGTTGTCATTCCAACGATCGACCTCGCCGGCCTCGACTCCCCCGATCTCCGCCCCTCGATCGTCGACCAGATTCGAAACGCCTCATCGACCTTCGGATTCTTCCAAATAATCAACCATGGAGTTCCGCAGAAAGTGCTCGATGATATAATCGATTCGATTAGGGCTTTTCACGAACTGCCATCGGAGGCGAAATCGCCGTACTACCAGAGGAACGTTGGGACCGGAGTGTCGTACTTGTCGAACATCGATCTGTTCAAAGCGAAGGCGGCGAGTTGGAGAGACACGCTTCAGATAGGGATAGGGCCGGCGAAGGCCGCAGCGGCGGCGGAGAATATTCCAGAGGTCTGTAGGGCGGCGGTTGCGGAGTGGGCGTCGGAGACGGAGAGGTTAGGGTTTGTGTTGGAGGAGTTGCTGTCTGAGGGATTAGGGCTGAAATCGGAGCGGCTTAAGGAGGCGACGTACGGGGAAAGGCGGATGATGGTGGGGCATTACTATCCGTACTGCCCGCAGCCGGATCTGACGGTGGGGATTAAATCGCACACGGATCCTGGAGTTTTGACTGTGCTTCTGCAGGACCACATCGGCGGTTTGCAGATTCGGCACGGCGGCGGGTGGGTGGATGTGGAGCCTGTCGCCGGTGCTCTTGTTATTAACATTGGCGATTTGCTTCAGATTGCATCAAATGACGTGTACAAGAGCGTGGAGCATAGAGTCCTGGCGAATGGGAAGTCAGAAGCACGGATTTCGATTGCAGTGTTCTACAACCCTGAAATTAGAGACAACTTATACGGACCACTCCCGGAGCTAATCACACCGGAGACACCTGCAGTTTATCGGCAATTCACGTACGATGATTACATAACGAGGTTCTTCAACAAGGAGCTAGATGGCAAATCTTTGCCCAACCATTATCGAATTTGA 1191 53.4 MHGLCNSKPLSLFQPTFPTRNHSRTSINKLHIVKMATDFDRAAELKQFDETKAGVKGLLDAGLNQIPRIFIHPPETLSDLKPTLKSSGEAVVIPTIDLAGLDSPDLRPSIVDQIRNASSTFGFFQIINHGVPQKVLDDIIDSIRAFHELPSEAKSPYYQRNVGTGVSYLSNIDLFKAKAASWRDTLQIGIGPAKAAAAAENIPEVCRAAVAEWASETERLGFVLEELLSEGLGLKSERLKEATYGERRMMVGHYYPYCPQPDLTVGIKSHTDPGVLTVLLQDHIGGLQIRHGGGWVDVEPVAGALVINIGDLLQIASNDVYKSVEHRVLANGKSEARISIAVFYNPEIRDNLYGPLPELITPETPAVYRQFTYDDYITRFFNKELDGKSLPNHYRI 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 355022 356797 + CmaCh04G000740.1 Cma04g00074 291155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00074 396 SUPERFAMILY Clavaminate synthase-like 52 388 - -
Cma04g00074 396 Pfam non-haem dioxygenase in morphine synthesis N-terminal 93 192 IPR026992 -
Cma04g00074 396 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 36 382 - -
Cma04g00074 396 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 245 346 IPR005123 -
Cma04g00074 396 Pfam 2OG-Fe(II) oxygenase superfamily 249 346 IPR044861 -
Cma04g00074 396 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG 4-LIKE 36 382 - -
Cma04g00074 396 Gene3D - 45 378 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00074 - - - bhj:120081582 673.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00074 Cma-Chr4:355022 Cma08g01091 Cma-Chr8:6804306 4.64E-111 dispersed
Cma04g00074 Cma-Chr4:355022 Cma06g01334 Cma-Chr6:8766669 4.04E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g488 . . . . . Bpe10g00997 Bma14g01935 Bma15g00029 . . . Cma04g00074 . Car04g00070 . . . Bhi07g00382 . . Lac13g1352 . . . Cla07g00549 Cam07g0585 Cec07g0648 Cco07g0615 Clacu07g0588 Cmu07g0623 Cre07g0959 . . . . Lsi04g01107 . . Cme10g01612 . Blo11g00968 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009009 2 1 1 2 1 1 1 1 1 0 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00074 Cma_Chr04 FPKM 22.806253 26.299381 75.911255 74.208252 78.556015 72.479225 76.195206 175.20636 176.346237 158.686234