Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00080 ATGGAGGATTCTCGCGCCAATGCGCTAATCCAGATGAGGAAAGCCGTCGAGAAATCAGGCATCAACACACAAGAGTACTGCGATGCGACGATGATGAGATTCTTGATCGCGAGGTCTATGGAGCCTTCGAAAGGAGCAAAGATGTTCGTACAATGGCGGACATGGAGAGATGCGATGGTTCCGAAGGGTTTTATTTGTGAATCGGAGGTTAAGGAGGAGTTGGAGGCCAAGAAGATTTTCTTGCAGGGATTGTCCAAGACAGGACTGGCTGTGATGATTGTTATGGCTAAACGCCATTTTTCTTCCAAGGATCAACTCCAGTTCAAGAAATTCCTGGTTCATCTCTTGGACAAGGTCATTGCAAGTGGTAGCGAAGGAAAAGAAATTGGAAACGAAAAGTGGATTGCTATTGTTGATCTTCACCAAATCTCATACAAGAATGTTGATATACGTGGACTCATCACAGGGTTTCAATTTCTACAGGCACGCTTCCAGTTTACACTGATAGTCTGTGGGTTCCCCGGCCGCCTCAGCTCCGTTGAAGCCTTTTCTGTCTCTACAATGGCGGCGCTAGCTTCTTCACGAACCACCTTCTTCTTCTCCCCTGTTTCTCATCAACCTAAACCAAGGCGCATCTCTAGACTTGTTCGCATGGCGTATCAGGAGAACGGACCCTCTCTCGCTGTCGTCGGTGTCACTGGCGCTGTCGGCCAGGAATTTCTCTCCGTCCTTTCCGATCGCGGCTTTCCTTATAGCTCAATCAAGATGCTGGCCTCCAAGCGCTCCTCTGGAAAATCCGTTCACTTCCATGGCGAAGAGCATATTGTCGAGGAGCTCACTGCGGATAGCTTCGACGGTGTCGACATTGCTCTCTTCAGCGCTGGGGGATCCATCAGCAAGAAGTTTGGACCGCTCGCCGTTGAGAAGGGGACGATTGTGGTCGATAATAGCTCTGCCTTTCGGATGGATGAGAATGTGCCACTTGTTATTCCGGAGGTTAATCCCGACGCCATGAAGGGGATTAAGGTCGGGACCGGCAAGGGCGCTTTGATTGCTAATCCCAATTGTTCTACCATCATTTGCTTGATGGCGGTCACTCCTCTGCATCGTCACGCTAAGGTGTTACGCATGGTTGTTAGTACGTATCAAGCAGCTAGTGGTGCTGGTGCAGCAGCCATGGAAGAGCTTGTGCAACAAACTCGTGAGGTTCTGGAAGGAAAACCACCAACTTGTAATATATTTAGGGATCAGTATGCTTTCAATTTGTTCTCCCACAATGCATCCGTTCTTTCAAATGGATACAATGAAGAGGAAATGAAATTAGTAAAAGAAACTCGGAAAATTTGGAGCGATGCAAATGTTAAAGTTACTGCTACTTGTATTCGAGTTCCTGTCATGCGTGCGCATGCCGAGAGTGTGAATCTTCAATTTGAGAATCCTCTTGACGAGGACGCAGCTAAAGAGATTCTAAAAAATGCTCCTGGAGTTGTCATTATTGACGACCGGGCTGCCAACCAATTTCCGACACCGCTGAAGGTATCGAACAAAGACGACGTTGCAGTTGGGAGGATCCGACAGGATATTTCACTAGATGGAAATAAAGGGTTGGATATCTTCATCTGTGGTGATCAAATACGAAAGGGCGCTGCGCTTAATGCCGTTCAGATTGCTGAGATGTTACTGTAG 1686 47.69 MEDSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRTWRDAMVPKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFKKFLVHLLDKVIASGSEGKEIGNEKWIAIVDLHQISYKNVDIRGLITGFQFLQARFQFTLIVCGFPGRLSSVEAFSVSTMAALASSRTTFFFSPVSHQPKPRRISRLVRMAYQENGPSLAVVGVTGAVGQEFLSVLSDRGFPYSSIKMLASKRSSGKSVHFHGEEHIVEELTADSFDGVDIALFSAGGSISKKFGPLAVEKGTIVVDNSSAFRMDENVPLVIPEVNPDAMKGIKVGTGKGALIANPNCSTIICLMAVTPLHRHAKVLRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFRDQYAFNLFSHNASVLSNGYNEEEMKLVKETRKIWSDANVKVTATCIRVPVMRAHAESVNLQFENPLDEDAAKEILKNAPGVVIIDDRAANQFPTPLKVSNKDDVAVGRIRQDISLDGNKGLDIFICGDQIRKGAALNAVQIAEMLL 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 394260 401699 + CmaCh04G000800.1 Cma04g00080 291161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00080 561 SUPERFAMILY CRAL/TRIO N-terminal domain 3 65 IPR036273 -
Cma04g00080 561 SMART Semialdhyde_dh_3 226 341 IPR000534 GO:0016620|GO:0051287
Cma04g00080 561 TIGRFAM asd_B: aspartate-semialdehyde dehydrogenase 227 560 IPR005986 GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661
Cma04g00080 561 PANTHER BNAA09G26740D PROTEIN 218 561 - -
Cma04g00080 561 Hamap Aspartate-semialdehyde dehydrogenase [asd]. 224 561 IPR012080 GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661
Cma04g00080 561 Gene3D Dihydrodipicolinate Reductase; domain 2 356 543 - -
Cma04g00080 561 Pfam Semialdehyde dehydrogenase, dimerisation domain 366 547 IPR012280 GO:0008652|GO:0016620|GO:0046983
Cma04g00080 561 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 355 548 - -
Cma04g00080 561 Gene3D - 227 560 - -
Cma04g00080 561 Gene3D - 1 180 IPR036865 -
Cma04g00080 561 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 218 561 - -
Cma04g00080 561 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 227 383 IPR036291 -
Cma04g00080 561 Pfam Semialdehyde dehydrogenase, NAD binding domain 227 340 IPR000534 GO:0016620|GO:0051287
Cma04g00080 561 SUPERFAMILY CRAL/TRIO domain 68 165 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00080 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] - csv:101206329 666.766
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01034 Cma04g00080 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00080 Cma-Chr4:394260 Cma14g01392 Cma-Chr14:10753653 3.63E-20 dispersed
Cma04g01035 Cma-Chr4:5368161 Cma04g00080 Cma-Chr4:394260 0 transposed
Cma04g00080 Cma-Chr4:394260 Cma04g01034 Cma-Chr4:5363695 3.03E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g505 . . . . . Bpe10g01002 . Bma15g00025 Cmo04g01105 . Cma04g01034 Cma04g00080 Car04g00965 Car04g00080 Sed04g0300 . . Bhi07g00408 Tan04g1492 Cmetu10g0732 Lac13g1311 Hepe01g0602 . . Cla07g00528 Cam07g0570 Cec07g0617 Cco07g0593 Clacu07g0570 Cmu07g0607 Cre07g0940 . . . . Lsi04g01095 . . . Blo06g01032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005424 1 1 1 1 2 1 2 1 1 0 1 1 2 0 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00080 Cma_Chr04 FPKM 18.068636 19.08604 10.928316 10.728542 54.899502 56.292568 53.501453 23.985012 24.519821 24.989639