Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00085 ATGAAATCCAAGAAGCGAAGGTCGAAGCCGAAACCGCAATCGGAGTGTCCTCCCAAGAAGAAGCTTCGTTCTCAGCTTCCTCGCCGGAGACGCGCTCGGATTTCTCCTGTTTTCTGCTTGCCGGAGTCGGATTCGGCTGCTCCGTGTACGAGTGTTGATCTCGTTTCTTCTTCCGTTGCTGCGGCTGAGTCCAGCTGCGGTTCCTTCCAGGGAGGAGGAGGAGGTGAGGTTTCTAGTCAACTCAATGCGGTTTTTGAATTGGAGTGTGGTGCTGTGAATGCGAGGACGAATTTGCGGAAGACGCGATTTGGTTCGAGTGCCGAGTTTATTGACGTGAATTTGGATTCTGCTTCCAATGGAGTAACGAGAGCTTGCTTTAACGACGAGTGTGAGGTTAAGAAGGGAAGGAATGAGGCTAACGTCGAAGTTTCTGAATCGTCGTGCGTGGAGTCGAATTCTGGAGTTGATTTTGTTGTTCTCGGACGGAGTAGCTCGAAGTTGAAGATTAGGAGTGGTTTTAGGAGAACCGTAGAGGAAAATGAAGATCAAGCCGGTCAAGCGGAAAATGGAGCTCTGAAGTTCGAACTGACTGATGCTGATGTCTCGTCGAAGCTTTGTGGAAAGGGAACTGTGCCACTCACTCCTTGTGTAGAGTCTTGGGCTGAATCTATCTTCGAGAGCGTCTGTTCGTTCGAAGAGAAAGGATTAGAGGTTGAGGAGAACAGAGTATGGGAATTTCAGGTACCGGAGATACCGAGGAATGAGGTCAATGAAACTTTCACTATTTCGAAGTCGGATTCGACAATAGAACAGTGGCCTAACAGCTTGAAGTTTGAATCGGATCTTGCTTGCACGGAGCAATTATCTTACGAGGACGTTTCGGAATACTCTTGCCAGGACTTGCGCGAGCTTCAGTCAACAATTCTAATGGGGATTTCTGATACGGACTGCTCAGATTACACTCCTTCAAATTTCTTGGAATCCGGAAGCGAGTTTTCAGAGAAATCGAACGAAGATGCAGCTCCTTCATCAGCATTTAGCATGTTACTGCAGTTCAGAAGCGATTTTTTAAGATCATGTGCCTCTCAAGACATCAGAACTAGCTCGTCAATTGAAGAAGAGAACGCAGATCAATCTTTGTTTTTGAGATTGGAAGGATTGGACGATGAAGAAACCTATCGAATATTCAGAAACAGAGAAAGACGCCAATTGATTATTCGCGACTACGTTGATGAGTACCGGTCCACGACGGATTATGGCGATCTCATCCTCCAGCAACGATCAAATATGGTTCAATGGATAGTTGAACGATCGAGAGATACCAAACTTCATCAGGAGACGACATTTTTAGGAGTAACCCTTCTCGACCAGATTCTGCGCAAAGGATTCTTCAAAGCTGGAAGACACCTTCAAATTCTGGGCGTAGCATGTCTAACTTTGGCCACTAGAATTGAAGAAAATCAATCATACAGCTGGATGCAGCAAAGGAGCATCCGTGTAGGGGACAACACCTATAGAAGATCTGAAGTTGTTGGCATGGAATGGCTTGTTCAAGAAGTCCTAAAGTTCCAGTGTTTCCTGCCAACTGTTTACAATTTCTTGGGGTTCTACCTGAAAGCTGCTGGAGCGGACTCAGATTTGGAGAATCGAGCTAAGAACTTCGCAGTGCTCGTTCTTTCAGATCAAGTCCAATTTTGTTATTTCCCTTCAACTATTGCAGCTGCGGTTGTACTCCTGGCATCCTTCGGAGAAACACAATATTTACCAAATCAACGAGTCATCGAGACGCATGTCAGAACAGAAAGTGATGATCTTCCCGAATGTATCGAGAGCTTGGAGTGGCTATTGAAGTTTGTATGA 1860 45.86 MKSKKRRSKPKPQSECPPKKKLRSQLPRRRRARISPVFCLPESDSAAPCTSVDLVSSSVAAAESSCGSFQGGGGGEVSSQLNAVFELECGAVNARTNLRKTRFGSSAEFIDVNLDSASNGVTRACFNDECEVKKGRNEANVEVSESSCVESNSGVDFVVLGRSSSKLKIRSGFRRTVEENEDQAGQAENGALKFELTDADVSSKLCGKGTVPLTPCVESWAESIFESVCSFEEKGLEVEENRVWEFQVPEIPRNEVNETFTISKSDSTIEQWPNSLKFESDLACTEQLSYEDVSEYSCQDLRELQSTILMGISDTDCSDYTPSNFLESGSEFSEKSNEDAAPSSAFSMLLQFRSDFLRSCASQDIRTSSSIEEENADQSLFLRLEGLDDEETYRIFRNRERRQLIIRDYVDEYRSTTDYGDLILQQRSNMVQWIVERSRDTKLHQETTFLGVTLLDQILRKGFFKAGRHLQILGVACLTLATRIEENQSYSWMQQRSIRVGDNTYRRSEVVGMEWLVQEVLKFQCFLPTVYNFLGFYLKAAGADSDLENRAKNFAVLVLSDQVQFCYFPSTIAAAVVLLASFGETQYLPNQRVIETHVRTESDDLPECIESLEWLLKFV 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 419964 425964 - CmaCh04G000850.1 Cma04g00085 291166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00085 619 PANTHER CYCLINS 1 610 IPR039361 -
Cma04g00085 619 MobiDBLite consensus disorder prediction 1 30 - -
Cma04g00085 619 Gene3D - 417 521 - -
Cma04g00085 619 PANTHER CYCLIN-SDS 1 610 - -
Cma04g00085 619 SMART cyclin_7 532 617 IPR013763 -
Cma04g00085 619 SMART cyclin_7 432 519 IPR013763 -
Cma04g00085 619 SUPERFAMILY Cyclin-like 387 524 IPR036915 -
Cma04g00085 619 SUPERFAMILY Cyclin-like 528 614 IPR036915 -
Cma04g00085 619 CDD CYCLIN 427 486 IPR013763 -
Cma04g00085 619 Pfam Cyclin, N-terminal domain 393 524 IPR006671 -
Cma04g00085 619 Gene3D - 522 618 - -
Cma04g00085 619 CDD CYCLIN 527 608 IPR013763 -
Cma04g00085 619 Pfam Cyclin, C-terminal domain 528 613 IPR004367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00085 K21777 CCNB; G2/mitotic-specific cyclin-B, other - csv:101214640 732.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00085 Cma-Chr4:419964 Cma15g00658 Cma-Chr15:3138809 5.77E-20 dispersed
Cma04g00085 Cma-Chr4:419964 Cma04g01041 Cma-Chr4:5391214 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g524 . . . . . . Bma14g01920 . . . . Cma04g00085 . Car04g00086 . . . . . . . . . . . . . . . . . . . Cone6ag0348 Cone9ag0381 . . Chy10g00215 . . Blo11g00966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01127 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008679 0 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00085 Cma_Chr04 FPKM 0.0 0.0 0.0 0.202875 0.770989 0.992675 0.417717 0.290991 0.196017 0.126467